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BaseInfo

ncRNA ID	novel_zma_miR2995
Species	Zea mays
Class	miRNA
Genome position	Chr6:170224223-170224341 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	21
Mature sequence(if miRNA)	99 - CAAAAUGACUUACAAUUUGAA - 119
Stem-loop(if miRNA)	--                          -        A A          CAC   ACUC   CAAAUUGUAAGUCAUUUUGGCUUUUU AGGUAUGU G UUUUGCUGUG   CUA    U   |||||||||||||||||||||||||| |||||||| | ||||||||||   |||   GUUUAACAUUCAGUAAAACCGAAAAG UCUAUAUA C AAAAUGAUAC   GAU    A AA                          A        A A          ACA   CCGA
Stem-loop sequence	CAAAUUGUAAGUCAUUUUGGCUUUUUAGGUAUGUAGAUUUUGCUGUGCACCUAACUCUAAGCCUAGACACAUAGUAAAAACAAUAUAUCUAGAAAAGCCAAAAUGACUUACAAUUUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001153259.1	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   ||=|||||||||||||||||* targets:1030   UUUAAAUUGUAAGUCAUUUUA   1050 Target Full Sequence	2.0	Zea mays uncharacterized LOC100280333 (LOC100280333), mRNA	NA	coding protein	psRNATarget
BT056031.1	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   ||=|||||||||||||||||* targets:1030   UUUAAAUUGUAAGUCAUUUUA   1050 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0149N11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549736.1	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   **||||||||||||||||||| targets:1847   CCCAAAUUGUAAGUCAUUUUG   1867 Target Full Sequence	0.0	PREDICTED: Zea mays CTD-phosphatase-like protein (LOC100283041), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008681255.2	ncRNA:21   AAGUUUA-ACAUUCAGUAAAAC   1   ||||||*-|||||||||||||| targets:1468   UUCAAAACUGUAAGUCAUUUUG   1489 Target Full Sequence	3.0	PREDICTED: Zea mays probable RNA methyltransferase At5g51130 (LOC103654422), mRNA	NA	coding protein	psRNATarget
XM_008652568.2	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   *|||||||*|||||||||||* targets:3317   CUCAAAUUAUAAGUCAUUUUA   3337 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100191399), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008652562.2	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   *|||||||*|||||||||||* targets:3220   CUCAAAUUAUAAGUCAUUUUA   3240 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100191399), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652565.2	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   *|||||||*|||||||||||* targets:2965   CUCAAAUUAUAAGUCAUUUUA   2985 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100191399), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008652564.2	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   *|||||||*|||||||||||* targets:2964   CUCAAAUUAUAAGUCAUUUUA   2984 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100191399), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008652567.2	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   *|||||||*|||||||||||* targets:2961   CUCAAAUUAUAAGUCAUUUUA   2981 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100191399), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008652569.2	ncRNA:21   AAGUUUAACAUUCAGUAAAAC   1   *|||||||*|||||||||||* targets:2717   CUCAAAUUAUAAGUCAUUUUA   2737 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100191399), transcript variant X6, mRNA	NA	coding protein	psRNATarget