Search result

BaseInfo

ncRNA ID	novel_zma_miR2988
Species	Zea mays
Class	miRNA
Genome position	Chr5:95088605-95088695 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2287159
Length	24
Mature sequence(if miRNA)	1 - UUCAUGUGGAUUGAGCGGGAUUAG - 24
Stem-loop(if miRNA)	---UU          -  GC     UA UU     U   UCUCAAGC      CAUGUGGAUU GA  GGGAU  G  AAGUU AAA        A      |||||||||| ||  |||||  |  ||||| |||      GUAUAUUUAA CU  CCCUA  U  UUUAA UUU        A AUAAU          U  -A     GC UU     U   UCUAACUA
Stem-loop sequence	UUCAUGUGGAUUGAGCGGGAUUAGUUAAGUUUAAAUCUCAAGCAAAUCAAUCUUUUUAAUUUUUUCGAUCCCAUCUAAUUUAUAUGUAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT018999.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   ||||||||*|||||||||=||||| targets:464   CUAAUCCCUCUCAAUCCAUAUGAA   487 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:1131   CCAAUCCCGCUCAAUCCACAUGGA   1154 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:1131   CCAAUCCCGCUCAAUCCACAUGGA   1154 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:1622   CCAAUCCCGCUCAAUCCACAUGGA   1645 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:1889   CCAAUCCCGCUCAAUCCACAUGGA   1912 Target Full Sequence	1.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:1955   CCAAUCCCGCUCAAUCCACAUGGA   1978 Target Full Sequence	1.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:2050   CCAAUCCCGCUCAAUCCACAUGGA   2073 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:2032   CCAAUCCCGCUCAAUCCACAUGGA   2055 Target Full Sequence	1.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:2143   CCAAUCCCGCUCAAUCCACAUGGA   2166 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:2803   CCAAUCCCGCUCAAUCCACAUGGA   2826 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:2907   CCAAUCCCGCUCAAUCCACAUGGA   2930 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539703.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||||||||||||||||=| targets:63   CCAAUCCCGCUCAAUCCACAUGGA   86 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405903.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*|||||=||||||||||||||=| targets:82   CCAAUCCUGCUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*|||||=||||||||||||||=| targets:82   CCAAUCCUGCUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
JB166364.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*|||||=||||||||||||||=| targets:82   CCAAUCCUGCUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*|||||=||||||||||||||=| targets:881   CCAAUCCUGCUCAAUCCACAUGGA   904 Target Full Sequence	2.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
EZ064016.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*||||||||||||||| targets:123   CCAAUCCCACUCAAUCCACAUGAA   146 Target Full Sequence	1.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
XM_008675817.2	ncRNA:24   GA-UUAGGGCGAGUUAGGUGUACUU   1   ||-||||||*|||||||||||||=| targets:4059   CUCAAUCCCACUCAAUCCACAUGGA   4083 Target Full Sequence	2.5	PREDICTED: Zea mays probable chromatin-remodeling complex ATPase chain (LOC103650180), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI405889.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:82   CCAAUCCCACUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:82   CCAAUCCCACUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:82   CCAAUCCCACUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:83   CCAAUCCCACUCAAUCCACAUGGA   106 Target Full Sequence	2.5	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:83   CCAAUCCCACUCAAUCCACAUGGA   106 Target Full Sequence	2.5	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:83   CCAAUCCCACUCAAUCCACAUGGA   106 Target Full Sequence	2.5	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:92   CCAAUCCCACUCAAUCCACAUGGA   115 Target Full Sequence	2.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:92   CCAAUCCCACUCAAUCCACAUGGA   115 Target Full Sequence	2.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:92   CCAAUCCCACUCAAUCCACAUGGA   115 Target Full Sequence	2.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:101   CCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:101   CCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:101   CCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:101   CCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:101   CCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:101   CCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:748   CCAAUCCCACUCAAUCCACAUGGA   771 Target Full Sequence	2.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:877   CCAAUCCCACUCAAUCCACAUGGA   900 Target Full Sequence	2.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:179   CCAAUCCCACUCAAUCCACAUGGA   202 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:531   CCAAUCCCACUCAAUCCACAUGGA   554 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1533   CCAAUCCCACUCAAUCCACAUGGA   1556 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1533   CCAAUCCCACUCAAUCCACAUGGA   1556 Target Full Sequence	2.5	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1818   CCAAUCCCACUCAAUCCACAUGGA   1841 Target Full Sequence	2.5	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1818   CCAAUCCCACUCAAUCCACAUGGA   1841 Target Full Sequence	2.5	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:2214   CCAAUCCCACUCAAUCCACAUGGA   2237 Target Full Sequence	2.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:2503   CCAAUCCCACUCAAUCCACAUGGA   2526 Target Full Sequence	2.5	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1961   CCAAUCCCACUCAAUCCACAUGGA   1984 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1961   CCAAUCCCACUCAAUCCACAUGGA   1984 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1084   CCAAUCCCACUCAAUCCACAUGGA   1107 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1202   CCAAUCCCACUCAAUCCACAUGGA   1225 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1202   CCAAUCCCACUCAAUCCACAUGGA   1225 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:1232   CCAAUCCCACUCAAUCCACAUGGA   1255 Target Full Sequence	2.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||||*|||||||||||||=| targets:5807   CCAAUCCCACUCAAUCCACAUGGA   5830 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   =*||||||*|||||||||||||=| targets:101   UCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   =*||||||*|||||||||||||=| targets:101   UCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   =*||||||*|||||||||||||=| targets:101   UCAAUCCCACUCAAUCCACAUGGA   124 Target Full Sequence	2.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   =*||||||*|||||||||||||=| targets:94   UCAAUCCCACUCAAUCCACAUGGA   117 Target Full Sequence	2.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   =*||||||*|||||||||||||=| targets:1127   UCAAUCCCACUCAAUCCACAUGGA   1150 Target Full Sequence	2.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   =*||||||*|||||||||||||=| targets:1127   UCAAUCCCACUCAAUCCACAUGGA   1150 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   =*||||||*|||||||||||||=| targets:1418   UCAAUCCCACUCAAUCCACAUGGA   1441 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||=|*=|||||||||||||| targets:101   CCAAUCUCAUUCAAUCCACAUGAA   124 Target Full Sequence	3.0	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||=|*=|||||||||||||| targets:101   CCAAUCUCAUUCAAUCCACAUGAA   124 Target Full Sequence	3.0	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   GAUUAGGGCGAGUUAGGUGUACUU   1   |*||||=|*=|||||||||||||| targets:101   CCAAUCUCAUUCAAUCCACAUGAA   124 Target Full Sequence	3.0	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget