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BaseInfo

ncRNA ID	novel_zma_miR2982
Species	Zea mays
Class	miRNA
Genome position	Chr5:14829252-14829316 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	42 - GAGAGGAGGGGAGUGAGAGGAGGA - 65
Stem-loop(if miRNA)	--G       -G    UG       --G    GC    AGAGGAG  GGAG  AGAGGAG   AGUU  U    |||||||  ||||  |||||||   ||||    UCUCCUC  CCUC  UUUUUUU   UCGA  A AUA       GG    GU       UAA    GG
Stem-loop sequence	GAGAGGAGGGGAGUGAGAGGAGGAGUUGCUAGGAGCUAAUUUUUUUUUGCUCCGGCUCCUCUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU966783.1	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   |==|||||||=|||=||||||||| targets:25   UUUUCCUCUCGCUCUCCUCCUCUC   48 Target Full Sequence	2.5	Zea mays clone 297374 MADS-box transcription factor 22 mRNA, complete cds	NA	coding protein	psRNATarget
BT035420.1	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   |==|||||||=|||=||||||||| targets:10   UUUUCCUCUCGCUCUCCUCCUCUC   33 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0060F04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111684.2	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   |==|||||||=|||=||||||||| targets:10   UUUUCCUCUCGCUCUCCUCCUCUC   33 Target Full Sequence	2.5	Zea mays m26 protein (m26), mRNA	NA	coding protein	psRNATarget
EU961077.1	ncRNA:24   AGGA---GGAGAGUGAGGGGAGGAGAG   1   |=||---||||||*||||||||||||| targets:32   UUCUMUGCCUCUCUCUCCCCUCCUCUC   58 Target Full Sequence	1.0	Zea mays clone 232616 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU944222.1	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   ||=*||||||*||||||||||||| targets:167   UCUGCCUCUCUCUCCCCUCCUCUC   190 Target Full Sequence	1.0	Zea mays clone 208121 mRNA sequence	NA	coding protein	psRNATarget
EU941208.1	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   ||=*||||||*||||||||||||| targets:167   UCUGCCUCUCUCUCCCCUCCUCUC   190 Target Full Sequence	1.0	Zea mays clone 1391571 mRNA sequence	NA	coding protein	psRNATarget
AY105896.1	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   ||=*||||||*||||||||||||| targets:164   UCUGCCUCUCUCUCCCCUCCUCUC   187 Target Full Sequence	1.0	Zea mays PCO140796 mRNA sequence	NA	coding protein	psRNATarget
XM_008672070.1	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   ||=*||||||*||||||||||||| targets:174   UCUGCCUCUCUCUCCCCUCCUCUC   197 Target Full Sequence	1.0	PREDICTED: Zea mays Copper transport protein family (LOC100276276), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001150105.2	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   ||=*||||||*||||||||||||| targets:157   UCUGCCUCUCUCUCCCCUCCUCUC   180 Target Full Sequence	1.0	Zea mays Copper transport protein family (LOC100276276), mRNA	NA	coding protein	psRNATarget
EU955601.1	ncRNA:24   AGGAGGAGAGUGAGGGGAGGAGAG   1   ||=*||||||*||||||||||||| targets:60   UCUGCCUCUCUCUCCCCUCCUCUC   83 Target Full Sequence	1.0	Zea mays clone 1539227 mRNA sequence	NA	coding protein	psRNATarget