ncRNA ID | osa-miR1874-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr8:8702798-8702948 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 95 - UAGGGCUACUACACCAUCCAUAAG - 118 |
Stem-loop(if miRNA) |
-CC             A   CAGUGGU    A   A   C   U  -A         A   -     AUCUUCGA       A    AUAAUCAUCUAUU GUA       GAAG CAU GGG UAC AC  CCAUCCAUA GGG UUCGA        UGUGCCU G    ||||||||||||| |||       |||| ||| ||| ||| ||  ||||||||| ||| |||||        ||||||| A    UAUUGGUAGAUAA CAU       UUUC GUA CCC AUG UG  GGUAGGUAU CCC AGGUU        ACAUGGG U UUU             A   -------    C   G   A   -  GA         A   U     -------G       A |
Stem-loop sequence | CCAUAAUCAUCUAUUAGUACAGUGGUGAAGACAUAGGGCUACUACACCAUCCAUAAGGGUUCGAAUCUUCGAUGUGCCUAGAUAGGGUACAGUUGGAUCCCAUAUGGAUGGAGGUGUAACCCGAUGCCUUUUACAAAUAGAUGGUUAUUUU |
1 | PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008). |
2 | PMID:19055717
"Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"; Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M; BMC Plant Biol. 8:123(2008). |
3 | PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds"; Xue LJ, Zhang JJ, Xue HW; Nucleic Acids Res. 37:916-930(2009). |