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BaseInfo

ncRNA ID	novel_zma_miR2973
Species	Zea mays
Class	miRNA
Genome position	Chr10:83373290-83373383 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2287031;SRR2287161
Length	24
Mature sequence(if miRNA)	1 - UCCAUAUGGAUUGAGGGAGAUUGA - 24
Stem-loop(if miRNA)	--                 A      -------GU  -- UUUCAAUCCCU   UCCAUAUGGAUUGAGGG GAUUGA         GG  G           A   ||||||||||||||||| ||||||         ||  |           G   AGGUAUACCUAACUUCC CUAACU         UC  U           U UU                 C      AUGCCUAAC  UC CUAAAACUGAA
Stem-loop sequence	UCCAUAUGGAUUGAGGGAGAUUGAGUGGGUUUCAAUCCCUAGUAAGUCAAAAUCUCUCUCAAUCCGUAUCAAUCCCCUUCAAUCCAUAUGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654469.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |||||||||=|||||||||||||| targets:3120   UCAAUCUCCUUCAAUCCAUAUGGA   3143 Target Full Sequence	1.0	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||||||||||||||||| targets:1969   UCAAUCCCCCUCAAUCCAUAUGGA   1992 Target Full Sequence	1.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||||||||||||||||| targets:606   UCAAUCCCCCUCAAUCCAUAUGGA   629 Target Full Sequence	1.0	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||||||||||||||||| targets:1608   UCAAUCACCCUCAAUCCAUAUGGA   1631 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||||||||||||||||| targets:1608   UCAAUCACCCUCAAUCCAUAUGGA   1631 Target Full Sequence	1.0	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||||||||||||||||| targets:849   UCAAUCCCCCUCAAUCCAUAUGGA   872 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||||||||||||||||| targets:80   UCAAUCCCCCUCAAUCCAUAUGGA   103 Target Full Sequence	1.0	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||||||||||||||||| targets:80   UCAAUCCCCCUCAAUCCAUAUGGA   103 Target Full Sequence	1.0	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||||||||||||||||| targets:80   UCAAUCCCCCUCAAUCCAUAUGGA   103 Target Full Sequence	1.0	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |||||||||=*||||||||||||| targets:335   UCAAUCUCCUCCAAUCCAUAUGGA   358 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||=|||||||||||||| targets:976   UCAAUCCCCUUCAAUCCAUAUGGA   999 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||=|||||||||||||| targets:1497   UCAAUCCCCUUCAAUCCAUAUGGA   1520 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||=|||||||||||||| targets:1497   UCAAUCCCCUUCAAUCCAUAUGGA   1520 Target Full Sequence	2.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||=|||||||||||||| targets:1483   UCAAUCCCCUUCAAUCCAUAUGGA   1506 Target Full Sequence	2.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||=|||||||||||||| targets:1465   UCAAUCCCCUUCAAUCCAUAUGGA   1488 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*||=|||||||||||||| targets:1421   UCAAUCCCCUUCAAUCCAUAUGGA   1444 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*|=||||||||||||||| targets:1073   UCAAUCCCUCUCAAUCCAUAUGGA   1096 Target Full Sequence	2.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |||||||||=*||||||||||||| targets:1008   UCAAUCUCCUCCAAUCCAUAUGGA   1031 Target Full Sequence	2.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*=|||||||||||||||| targets:81   UCAAUCCUCCUCAAUCCAUAUGGA   104 Target Full Sequence	2.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*=|||||||||||||||| targets:81   UCAAUCCUCCUCAAUCCAUAUGGA   104 Target Full Sequence	2.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||*=|||||||||||||||| targets:81   UCAAUCCUCCUCAAUCCAUAUGGA   104 Target Full Sequence	2.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||=|||*||=|||||||||||||| targets:1698   UCGAUCCCCUUCAAUCCAUAUGGA   1721 Target Full Sequence	2.0	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
EU972313.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||=|||*||||||||||||||||* targets:30   UCGAUCCCCCUCAAUCCAUAUGGC   53 Target Full Sequence	2.0	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||||*|||||||||*||||| targets:1446   UCAAUCUCACUCAAUCCACAUGGA   1469 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   ||||||||*|||||||||*||||| targets:1446   UCAAUCUCACUCAAUCCACAUGGA   1469 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||||*||||||||||||||||| targets:1209   UGAAUCCCCCUCAAUCCAUAUGGA   1232 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||||*||||||||||||||||| targets:937   UGAAUCCCCCUCAAUCCAUAUGGA   960 Target Full Sequence	1.0	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||||*||||||||||||||||| targets:937   UGAAUCCCCCUCAAUCCAUAUGGA   960 Target Full Sequence	1.0	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||||*||||||||||||||||| targets:907   UGAAUCCCCCUCAAUCCAUAUGGA   930 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||||*||||||||||||||||| targets:910   UGAAUCCCCCUCAAUCCAUAUGGA   933 Target Full Sequence	1.0	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||||*||||||||||||||||| targets:370   UGAAUCCCCCUCAAUCCAUAUGGA   393 Target Full Sequence	1.0	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   AGUUA-GAGGGAGUUAGGUAUACCU   1   ||==|-||*|||||||||||||||| targets:1547   UCGGUUCUACCUCAAUCCAUAUGGA   1571 Target Full Sequence	3.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_020537815.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |=||||*||||||||||*|||||| targets:2603   UUAAUCCCCCUCAAUCCCUAUGGA   2626 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA	NA	coding protein	psRNATarget
LQ239468.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |=||||*||||||||||*|||||| targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96 Target Full Sequence	2.5	Sequence 5463 from Patent EP2985353	NA	coding protein	psRNATarget
JB167799.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |=||||*||||||||||*|||||| targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96 Target Full Sequence	2.5	Sequence 5463 from Patent EP2559767	NA	coding protein	psRNATarget
HI407338.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |=||||*||||||||||*|||||| targets:73   UUAAUCCCCCUCAAUCCCUAUGGA   96 Target Full Sequence	2.5	Sequence 5463 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||*||||||||||*|||||| targets:3927   CCAAUCCCCCUCAAUCCCUAUGGA   3950 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:2351   CCAAUCUCACUCAAUCCACAUGGA   2374 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:2291   CCAAUCUCACUCAAUCCACAUGGA   2314 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:2284   CCAAUCUCACUCAAUCCACAUGGA   2307 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:2156   CCAAUCUCACUCAAUCCACAUGGA   2179 Target Full Sequence	2.5	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:2155   CCAAUCUCACUCAAUCCACAUGGA   2178 Target Full Sequence	2.5	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:2083   CCAAUCUCACUCAAUCCACAUGGA   2106 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:249   CCAAUCUCACUCAAUCCACAUGGA   272 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:458   CCAAUCUCACUCAAUCCACAUGGA   481 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:94   CCAAUCUCACUCAAUCCACAUGGA   117 Target Full Sequence	2.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:94   CCAAUCUCACUCAAUCCACAUGGA   117 Target Full Sequence	2.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:94   CCAAUCUCACUCAAUCCACAUGGA   117 Target Full Sequence	2.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:90   CCAAUCUCACUCAAUCCACAUGGA   113 Target Full Sequence	2.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:90   CCAAUCUCACUCAAUCCACAUGGA   113 Target Full Sequence	2.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:90   CCAAUCUCACUCAAUCCACAUGGA   113 Target Full Sequence	2.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:82   CCAAUCUCACUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:82   CCAAUCUCACUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:82   CCAAUCUCACUCAAUCCACAUGGA   105 Target Full Sequence	2.5	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   *|||||||*|||||||||*||||| targets:19   CCAAUCUCACUCAAUCCACAUGGA   42 Target Full Sequence	2.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
XM_008653299.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |==|||*||||||||||*|||||| targets:820   UUGAUCCCCCUCAAUCCCUAUGGA   843 Target Full Sequence	2.5	PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670868.2	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||*||=|||||||=|||||||| targets:2608   UGAAACUUCCUCAAUUCAUAUGGA   2631 Target Full Sequence	2.5	PREDICTED: Zea mays elongation factor G-2, chloroplastic (LOC103646146), mRNA	NA	coding protein	psRNATarget
LQ239078.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||*||=|||||||=|||||||| targets:50   UGAAACUUCCUCAAUUCAUAUGGA   73 Target Full Sequence	2.5	Sequence 5073 from Patent EP2985353	NA	coding protein	psRNATarget
HI406948.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||*||=|||||||=|||||||| targets:50   UGAAACUUCCUCAAUUCAUAUGGA   73 Target Full Sequence	2.5	Sequence 5073 from Patent EP2074227	NA	coding protein	psRNATarget
JB167409.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||*||=|||||||=|||||||| targets:50   UGAAACUUCCUCAAUUCAUAUGGA   73 Target Full Sequence	2.5	Sequence 5073 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   AG-UUAGAGGGAGUUAGGUAUACCU   1   ||-||||||*|||||||||*||||| targets:3440   UCUAAUCUCACUCAAUCCACAUGGA   3464 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   AG-UUAGAGGGAGUUAGGUAUACCU   1   ||-||||||*|||||||||*||||| targets:3409   UCUAAUCUCACUCAAUCCACAUGGA   3433 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   AG-UUAGAGGGAGUUAGGUAUACCU   1   ||-||||||*|||||||||*||||| targets:3396   UCUAAUCUCACUCAAUCCACAUGGA   3420 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   AG-UUAGAGGGAGUUAGGUAUACCU   1   ||-||||*|*||||||||||||||| targets:2084   UCUAAUCCCACUCAAUCCAUAUGGA   2108 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   AG-UUAGAGGGAGUUAGGUAUACCU   1   ||-||||*|*||||||||||||||| targets:1367   UCUAAUCCCACUCAAUCCAUAUGGA   1391 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   AGUUAGAGGGAGUUAGGUAUACCU   1   |*||*|*||||||||||||||||| targets:93   UAAAACCCCCUCAAUCCAUAUGGA   116 Target Full Sequence	1.0	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget