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BaseInfo

ncRNA ID	novel_zma_miR2972
Species	Zea mays
Class	miRNA
Genome position	Chr5:128730482-128730552 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - CAGGUCGCGGACUGUCCGGCCCCA - 24
Stem-loop(if miRNA)	--    G     C     -   G CAG     AAAA   GGGC CGGAC GUCCG GAC U   GCAGG    C   |||| ||||| ||||| ||| |   |||||    C   CCCG GCCUG CAGGC CUG A   CGUCC    U AC    -     U     G   G CCG     CCGA
Stem-loop sequence	GGGCGCGGACCGUCCGGACGUCAGGCAGGAAAACCUAGCCCCUGCGCCAGGUCGCGGACUGUCCGGCCCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061906.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   |||||||||||=|||||||||||| targets:210   UGGGGCCGGACGGUCCGCGACCUG   233 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   |||||||||||=|||||||||||| targets:647   UGGGGCCGGACGGUCCGCGACCUG   670 Target Full Sequence	1.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   **|||||||||=|||||||||||| targets:718   CAGGGCCGGACGGUCCGCGACCUG   741 Target Full Sequence	1.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   |||||||||||=|||||||||||| targets:682   UGGGGCCGGACGGUCCGCGACCUG   705 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   |||||||||||=|||||||||||| targets:1367   UGGGGCCGGACGGUCCGCGACCUG   1390 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   |||||||||||=|||||||||||| targets:1449   UGGGGCCGGACGGUCCGCGACCUG   1472 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ099059.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   *||||||||||=|||||||||||| targets:25   AGGGGCCGGACGGUCCGCGACCUG   48 Target Full Sequence	1.5	TSA: Zea mays contig34714, mRNA sequence	NA	coding protein	psRNATarget
EZ104830.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   |*|||||||||=|||||||||||| targets:40   UAGGGCCGGACGGUCCGCGACCUG   63 Target Full Sequence	1.5	TSA: Zea mays contig40487, mRNA sequence	NA	coding protein	psRNATarget
EU971146.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   |*|||||||||=|||||||||||| targets:346   UUGGGCCGGACGGUCCGCGACCUG   369 Target Full Sequence	1.5	Zea mays clone 358377 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI409795.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   *||||||*|||=|||||||||||| targets:37   AGGGGCCAGACGGUCCGCGACCUG   60 Target Full Sequence	2.5	Sequence 7920 from Patent EP2074227	NA	coding protein	psRNATarget
JB170256.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   *||||||*|||=|||||||||||| targets:37   AGGGGCCAGACGGUCCGCGACCUG   60 Target Full Sequence	2.5	Sequence 7920 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241925.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   *||||||*|||=|||||||||||| targets:37   AGGGGCCAGACGGUCCGCGACCUG   60 Target Full Sequence	2.5	Sequence 7920 from Patent EP2985353	NA	coding protein	psRNATarget
EU952231.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   *||||||*|||=|||||||||||| targets:446   AGGGGCCAGACGGUCCGCGACCUG   469 Target Full Sequence	2.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
XM_020540955.1	ncRNA:24   ACCCCGGCCUGUCAGGCGCUGGAC   1   **|*|||||||=|||||||||||| targets:945   CAGAGCCGGACGGUCCGCGACCUG   968 Target Full Sequence	1.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At1g07650 (LOC103632613), transcript variant X5, mRNA	NA	coding protein	psRNATarget