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BaseInfo

ncRNA ID	osa-miR1862b
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:8341200-8341398 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	45 - ACGAGGUUGGUUUAUUUUGGGACG - 68
Stem-loop(if miRNA)	UU     GAACAU  -UU     C  -   G  UA       A                    UA   AA   U         A     ---   CG GGUCAU  AGAUA      GU   CAUCU AG UGC CC  CUCCCUU GUCCCAAAAUAAAUUAAUCU  UAC  GAU UGGCACAUC UAGUA   CUA  A ||||||  |||||      ||   ||||| || ||| ||  ||||||| ||||||||||||||||||||  |||  ||| ||||||||| |||||   ||| CCAGUA  UCUAU      CA   GUAGG UC AUG GG  GAGGGAG CAGGGUUUUAUUUGGUUGGA  AUG  UUA ACUGUGUAG AUCAU   GGU  A       -C     -GACGC  UCC     C  U   A  --       G                    GC   CC   C         G     AUA   CU
Stem-loop sequence	GGUCAUUUAGAUAGAACAUGUUUCAUCUCAGUGCGCCUACUCCCUUAGUCCCAAAAUAAAUUAAUCUUAUACAAGAUUUGGCACAUCAUAGUACUACGAAUCUGGAUAUACUAGGAUGUGUCACAUUCCGUACGAGGUUGGUUUAUUUUGGGACGGAGGGAGGGAGUAUCUCGGAUGCCUACCGCAGUAUCUCAUGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015794280.1	ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGCA   1   *|||=|||||||||*||||||||| targets:886   GGUCUCAAAAUAAAACAACCUCGU   909 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group tricin synthase 2-like (LOC4345936), transcript variant X2, mRNA	tricin synthase 2-like(LOC4345936)	coding protein	psRNATarget
XM_015794281.1	ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGCA   1   *|||=|||||||||*||||||||| targets:976   GGUCUCAAAAUAAAACAACCUCGU   999 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group tricin synthase 2-like (LOC4345936), transcript variant X3, mRNA	tricin synthase 2-like(LOC4345936)	coding protein	psRNATarget
AK106735.1	ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGCA   1   *|||=|||||||||*||||||||| targets:1737   GGUCUCAAAAUAAAACAACCUCGU   1760 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-115-A04, full insert sequence	NA	coding protein	psRNATarget
AK288380.1	ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGCA   1   *|||=|||||||||*||||||||| targets:1839   GGUCUCAAAAUAAAACAACCUCGU   1862 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026L13, full insert sequence	NA	coding protein	psRNATarget
XM_015794279.1	ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGCA   1   *|||=|||||||||*||||||||| targets:2170   GGUCUCAAAAUAAAACAACCUCGU   2193 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group tricin synthase 2-like (LOC4345936), transcript variant X1, mRNA	tricin synthase 2-like(LOC4345936)	coding protein	psRNATarget
AK111475.1	ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGCA   1   =*||||||||||||||||||||*| targets:1260   UAUCCCAAAAUAAACCAACCUCAU   1283 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-183-F05, full insert sequence	NA	coding protein	psRNATarget
AK119335.1	ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGCA   1   =*||||||||||||||||||||*| targets:1090   UAUCCCAAAAUAAACCAACCUCAU   1113 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-C06, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).