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BaseInfo

ncRNA ID	novel_zma_miR2969
Species	Zea mays
Class	miRNA
Genome position	Chr6:124536114-124536226 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647388;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - GUCAGUCCAUCUCGUGUGCACACG - 24
Stem-loop(if miRNA)	--C     A      --    C    CCUAUA   CA       -ACUCUU   UU  G    GUGCA CAUGAG  GGAC GGCC      GGC  GAUCUUU       GCU  GA C    ||||| ||||||  |||| ||||      |||  |||||||       |||  ||    CACGU GUGCUC  CCUG CUGG      CCG  CUAGGAG       CGA  CU C GCA     -      UA    A    AUACCC   -C       CACAUCC   UC  C
Stem-loop sequence	CGUGCAACAUGAGGGACCGGCCCCUAUAGGCCAGAUCUUUACUCUUGCUUUGAGCCCUCCUAGCCCUACACGAGGAUCCGCCCCCAUAGGUCAGUCCAUCUCGUGUGCACACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU944650.1	ncRNA:24   GCACACGUGUGCUCUACCUGACUG   1   ||||||||||=||||||||||||| targets:113   CGUGUGCACAUGAGAUGGACUGAC   136 Target Full Sequence	1.0	Zea mays clone 225117 mRNA sequence	NA	coding protein	psRNATarget
BT018698.1	ncRNA:24   GCACACGUGUGCUCUACCUGACUG   1   =||||||||=|||||||||||||| targets:562   UGUGUGCACGCGAGAUGGACUGAC   585 Target Full Sequence	1.0	Zea mays clone EL01N0514C09.d mRNA sequence	NA	coding protein	psRNATarget
BT066839.1	ncRNA:24   GCACACGUGUGCUCUACCUGACUG   1   =||||||||=|||||||||||||| targets:1260   UGUGUGCACGCGAGAUGGACUGAC   1283 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0075P19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543692.1	ncRNA:24   GCACACGUGUGCUCUACCUGACUG   1   =|||||||||=||||||||||||= targets:1957   UGUGUGCACAUGAGAUGGACUGAU   1980 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (cl9687_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GCACACGUGUGCUCUACCUGACUG   1   =|||*||||||||||||||||||| targets:1920   UGUGCGCACACGAGAUGGACUGAC   1943 Target Full Sequence	0.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget