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BaseInfo

ncRNA ID	novel_zma_miR2965
Species	Zea mays
Class	miRNA
Genome position	Chr5:214802979-214803163 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	162 - AAGAGGGUGUUUGGUUUCUAGGGA - 185
Stem-loop(if miRNA)	--A  A                                    U           U    A  AUAU                              AG GGGUGUUUGGUUUCUAGGGACUAAUGUUUAGUCCCU CAUUUUAUUCU UUUU GU    AAAUUGCUAAAUAUAGAAACUAAAAUA    || |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||    ||||||||||||||||||||||||||A    UC CCCACAAACCAAAGAUCCCUGAUUACAAAUCAGGGA GUAAAAUAAGG AAAA CA    UUUAACGAUUUAUAUCUUUGAUUUUGA GAA  C                                    U           U    A  AGGU
Stem-loop sequence	AAGAGGGUGUUUGGUUUCUAGGGACUAAUGUUUAGUCCCUUCAUUUUAUUCUUUUUUAGUAUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUAGCAAUUUUGGAACAAAAAUGGAAUAAAAUGUAGGGACUAAACAUUAGUCCCUAGAAACCAAACACCCCCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008674147.2	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||||||||||||||||||||*||| targets:30   UCCCUAGAAACCAAACACCCCCUU   53 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA	NA	coding protein	psRNATarget
NM_001153051.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||=|||||||||||||||||*||| targets:940   UCUCUAGAAACCAAACACCCCCUU   963 Target Full Sequence	1.5	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||=|||||||||||||||||*||| targets:940   UCUCUAGAAACCAAACACCCCCUU   963 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543841.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||||||||||||||||||||*||* targets:1072   UCCCUAGAAACCAAACACCCCCUA   1095 Target Full Sequence	2.5	PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||||||||||||||||||||*||* targets:917   UCCCUAGAAACCAAACACCCCCUA   940 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||||||||||||||||||||*||* targets:2087   UCCCUAGAAACCAAACACCCCCUA   2110 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||||||||||||||||||||*||* targets:2087   UCCCUAGAAACCAAACACCCCCUA   2110 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||*|||||||||||||||||*||| targets:964   UCACUAGAAACCAAACACCCCCUU   987 Target Full Sequence	1.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||||||*|||||||||||||*||| targets:1346   UCCCUAUAAACCAAACACCCCCUU   1369 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676281.2	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||||||*|||||||||||||*||| targets:45   UCCCUACAAACCAAACACCCCCUU   68 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 14 (LOC103650716), mRNA	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||*|||||||||||||||||*||| targets:1694   UCACUAGAAACCAAACACCCCCUU   1717 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||=||*||||||||||||||*||| targets:968   UCUCUUGAAACCAAACACCCCCUU   991 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||=||*||||||||||||||*||| targets:968   UCUCUUGAAACCAAACACCCCCUU   991 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||*=||||||||||||||||*||| targets:1396   UCGUUAGAAACCAAACACCCCCUU   1419 Target Full Sequence	1.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
XM_020552698.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   |**||||*|||||||||||||||| targets:820   UGGCUAGCAACCAAACACCCUCUU   843 Target Full Sequence	1.0	PREDICTED: Zea mays signal peptide peptidase-like 4 (LOC103654100), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   |||*||*|||||||||||||*||| targets:295   UCCAUAUAAACCAAACACCCCCUU   318 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   |||*||*|||||||||||||*||| targets:295   UCCAUAUAAACCAAACACCCCCUU   318 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   |||*||*|||||||||||||*||| targets:295   UCCAUAUAAACCAAACACCCCCUU   318 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
BT066887.1	ncRNA:24   AGG-GAUCUUUGGUUUGUGGGAGAA   1   *||-=|||=|||||||||*|||||| targets:1188   GCCGUUAGGAACCAAACAGCCUCUU   1212 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0086N12 mRNA, complete cds	NA	coding protein	psRNATarget
BT017881.1	ncRNA:24   AGG-GAUCUUUGGUUUGUGGGAGAA   1   *||-=|||=|||||||||*|||||| targets:1113   GCCGUUAGGAACCAAACAGCCUCUU   1137 Target Full Sequence	2.5	Zea mays clone EL01N0514B08.c mRNA sequence	NA	coding protein	psRNATarget
EU970937.1	ncRNA:24   AGG-GAUCUUUGGUUUGUGGGAGAA   1   *||-=|||=|||||||||*|||||| targets:1256   GCCGUUAGGAACCAAACAGCCUCUU   1280 Target Full Sequence	2.5	Zea mays clone 354292 F-actin capping protein alpha subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158017.1	ncRNA:24   AGG-GAUCUUUGGUUUGUGGGAGAA   1   *||-=|||=|||||||||*|||||| targets:1256   GCCGUUAGGAACCAAACAGCCUCUU   1280 Target Full Sequence	2.5	Zea mays F-actin capping protein alpha subunit (LOC100285122), mRNA	NA	coding protein	psRNATarget
BT088215.1	ncRNA:24   AGG-GAUCUUUGGUUUGUGGGAGAA   1   *||-=|||=|||||||||*|||||| targets:1282   GCCGUUAGGAACCAAACAGCCUCUU   1306 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070N22 mRNA, complete cds	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   |||*||*|||||||||||||*||| targets:420   UCCAUAUAAACCAAACACCCCCUU   443 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
EU955243.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||---||=||=||||||||||||| targets:305   UC---AGGAAUCAAACACCCUCUU   325 Target Full Sequence	2.0	Zea mays clone 1520078 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU976322.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||---||=||=||||||||||||| targets:448   UC---AGGAAUCAAACACCCUCUU   468 Target Full Sequence	2.0	Zea mays clone 706364 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035175.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||---||=||=||||||||||||| targets:989   UC---AGGAAUCAAACACCCUCUU   1009 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0043I07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138192.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||---||=||=||||||||||||| targets:989   UC---AGGAAUCAAACACCCUCUU   1009 Target Full Sequence	2.0	Zea mays uncharacterized LOC100193024 (LOC100193024), mRNA	NA	coding protein	psRNATarget
XM_020553050.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||---||=||=||||||||||||| targets:1070   UC---AGGAAUCAAACACCCUCUU   1090 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193024 (LOC100193024), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553051.1	ncRNA:24   AGGGAUCUUUGGUUUGUGGGAGAA   1   ||---||=||=||||||||||||| targets:1170   UC---AGGAAUCAAACACCCUCUU   1190 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193024 (LOC100193024), transcript variant X3, mRNA	NA	coding protein	psRNATarget