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BaseInfo

ncRNA ID	novel_zma_miR2962
Species	Zea mays
Class	miRNA
Genome position	Chr5:208375388-208375443 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - GAAUUAUUUUAAUUCCCGUCGGCC - 24
Stem-loop(if miRNA)	--        UUAAU            CG   GAAUUAUU     UCCCGUCGGCCA  U   ||||||||     ||||||||||||   CUUAAUGA     GGGGCAGUCGGU  C CC        --UUU            CC
Stem-loop sequence	GAAUUAUUUUAAUUCCCGUCGGCCACGUCCCUGGCUGACGGGGUUUAGUAAUUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ110825.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:276   AGUCAACUGGAAUUAAAAUAAUAC   299 Target Full Sequence	2.5	TSA: Zea mays contig46486, mRNA sequence	NA	coding protein	psRNATarget
BT039666.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:698   AGUCAACUGGAAUUAAAAUAAUAC   721 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0037N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT070140.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:669   AGUCAACUGGAAUUAAAAUAAUAC   692 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0137J17 mRNA, complete cds	NA	coding protein	psRNATarget
BT088073.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:734   AGUCAACUGGAAUUAAAAUAAUAC   757 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0003B10 mRNA, complete cds	NA	coding protein	psRNATarget
AY107952.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:741   AGUCAACUGGAAUUAAAAUAAUAC   764 Target Full Sequence	2.5	Zea mays PCO096371 mRNA sequence	NA	coding protein	psRNATarget
EU961836.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:747   AGUCAACUGGAAUUAAAAUAAUAC   770 Target Full Sequence	2.5	Zea mays clone 238509 fruit protein PKIWI502 mRNA, complete cds	NA	coding protein	psRNATarget
EU966514.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:746   AGUCAACUGGAAUUAAAAUAAUAC   769 Target Full Sequence	2.5	Zea mays clone 294967 fruit protein PKIWI502 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155573.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:746   AGUCAACUGGAAUUAAAAUAAUAC   769 Target Full Sequence	2.5	Zea mays FAD/NAD(P)-binding oxidoreductase (pco096371), mRNA	NA	coding protein	psRNATarget
DQ245530.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:746   AGUCAACUGGAAUUAAAAUAAUAC   769 Target Full Sequence	2.5	Zea mays clone 16775 mRNA sequence	NA	coding protein	psRNATarget
EU961846.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   *|=|*||*||||||||||||||*| targets:742   AGUCAACUGGAAUUAAAAUAAUAC   765 Target Full Sequence	2.5	Zea mays clone 238610 fruit protein PKIWI502 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346848.1	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   ***|*|=||||||*|||||||||| targets:589   UAACAAUGGGAAUAAAAAUAAUUC   612 Target Full Sequence	2.5	Zea mays regulation of nuclear pre-mRNA domain-containing protein 1B-like (LOC103651671), mRNA	NA	coding protein	psRNATarget
XM_008677381.2	ncRNA:24   CCGGCUGCCCUUAAUUUUAUUAAG   1   ***|*|=||||||*|||||||||| targets:642   UAACAAUGGGAAUAAAAAUAAUUC   665 Target Full Sequence	2.5	PREDICTED: Zea mays regulation of nuclear pre-mRNA domain-containing protein 1B-like (LOC103651671), transcript variant X1, mRNA	NA	coding protein	psRNATarget