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BaseInfo

ncRNA ID novel_zma_miR2961
Species Zea mays
Class miRNA
Genome position Chr6:130529889-130530004 [-]
Reference genome RefGen_v4
Source SRR1583944;SRR2647391;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - AAGAUCUAUGGCGCCGAGCUCAGU - 24
Stem-loop(if miRNA) --AC                -  A          G ACA   UG  C    -A  -A  A
    AGCUCGGCGCCAUAGG CU UGGCGCCGAG U   UGC  CG UGGC  CA  AC G
    |||||||||||||||| || |||||||||| |   |||  || ||||  ||  ||
    UCGAGCCGCGGUAUCU GA ACCGCGGCUC A   ACG  GC GCCG  GU  UG A
UGAC                A  -          G GCC   GU  A    CG  GC  C
Stem-loop sequence ACAGCUCGGCGCCAUAGGCUAUGGCGCCGAGGUACAUGCUGCGCUGGCACAAACAGACGUCGUGGCGCCGACGUGGCACCGAGCUCGGCGCCAAGAUCUAUGGCGCCGAGCUCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541199.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*|||||||||||||||||||||
targets:128   ACCGAGCUCGGCGCCAUAGAUCUU   151

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  *|*|||||||||||||||||||||
targets:1220   UCCGAGCUCGGCGCCAUAGAUCUU   1243

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*|||||||||||||||||||||
targets:126   ACCGAGCUCGGCGCCAUAGAUCUU   149

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  *|*|||||||||||||||||||||
targets:1218   UCCGAGCUCGGCGCCAUAGAUCUU   1241

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*|||||||||||||||||||||
targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  *|*|||||||||||||||||||||
targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*|||||||||||||||||||||
targets:186   ACCGAGCUCGGCGCCAUAGAUCUU   209

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  *|*|||||||||||||||||||||
targets:1277   UCCGAGCUCGGCGCCAUAGAUCUU   1300

0.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  *|*|||||||||||||||||||||
targets:780   UCCGAGCUCGGCGCCAUAGAUCUU   803

0.0 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
LQ238112.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

1.0 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
JB166443.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

1.0 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
HI405982.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*||*||||||||||||||||||
targets:62   ACCGAACUCGGCGCCAUAGAUCUU   85

1.0 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
BT034188.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*|||||||||||||*|||||||
targets:754   ACCGAGCUCGGCGCCACAGAUCUU   777

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*|||||||||||||*|||||||
targets:754   ACCGAGCUCGGCGCCACAGAUCUU   777

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
BT068330.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  *||-|||||||||||||||||=||
targets:722   CCU-AGCUCGGCGCCAUAGAUUUU   744

1.5 Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds NA coding protein psRNATarget
XM_020538176.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||*|=|*|||||||||||||||||
targets:289   ACCGGGGUCGGCGCCAUAGAUCUU   312

1.0 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
EU948532.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--=||||||||=||||||||||
targets:435   AC--GGCUCGGCGUCAUAGAUCUU   456

1.5 Zea mays clone 379687 mRNA sequence NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  =|*|=|*|||||||||||||||||
targets:181   GCGGGGGUCGGCGCCAUAGAUCUU   204

1.0 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  |**|=|*|||||||||*|||||||
targets:241   AGGGGGGUCGGCGCCACAGAUCUU   264

2.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_020543999.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--=||||||||=||||||||||
targets:930   AC--GGCUCGGCGUCAUAGAUCUU   951

1.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020544000.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--=||||||||=||||||||||
targets:936   AC--GGCUCGGCGUCAUAGAUCUU   957

1.5 PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008678030.1
ncRNA:23   GAC-UCGAGCCGCGGUAUCUAGAA   1
  *||-|*||||||||||||||||||
targets:1   AUGUACCUCGGCGCCAUAGAUCUU   24

1.0 PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA NA coding protein psRNATarget
XM_020543535.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--|*||||||||||||||||||
targets:282   AC--AUCUCGGCGCCAUAGAUCUU   303

1.0 PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA NA coding protein psRNATarget
XM_020544775.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ***|=|*|||||||||||||||||
targets:61   CAGGGGGUCGGCGCCAUAGAUCUU   84

1.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||**|*||||||||||||||||||
targets:2   ACGUACCUCGGCGCCAUAGAUCUU   25

1.0 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_020545863.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ***|=|*|||||||||||||||||
targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150

1.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA NA coding protein psRNATarget
XM_020547098.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ***|=|*|||||||||||||||||
targets:127   CGGGGGGUCGGCGCCAUAGAUCUU   150

1.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA NA coding protein psRNATarget
BT038470.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--|*||||||||||||||||||
targets:1674   AC--AUCUCGGCGCCAUAGAUCUU   1695

1.0 Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds NA coding protein psRNATarget
NM_001146799.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--|*||||||||||||||||||
targets:1674   AC--AUCUCGGCGCCAUAGAUCUU   1695

1.0 Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA NA coding protein psRNATarget
XM_020547329.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--|*||||||||||||||||||
targets:1756   AC--AUCUCGGCGCCAUAGAUCUU   1777

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--|*||||||||||||||||||
targets:1781   AC--AUCUCGGCGCCAUAGAUCUU   1802

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:24   UGACUCGAGCCGCGGUAUCUAGAA   1
  ||--|*||||||||||||||||||
targets:1788   AC--AUCUCGGCGCCAUAGAUCUU   1809

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
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