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BaseInfo

ncRNA ID osa-miR1854-3p
Species Oryza sativa
Class miRNA
Genome position Chr8:7858365-7858472 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 10 - UCCAAUUUGGGGAUUUGCUGAU - 31
Stem-loop(if miRNA) C  --UU   A    G      G            UAACCCUAGAACCCCAUUU
 GU    UAA UGGU AAAUUU UAGAUUGGAGGG                   U
 ||    ||| |||| |||||| ||||||||||||                   U
 CG    AUU GUCG UUUAGG GUUUAACCUACA                   G
U  UGAU   A    -      G            ACUUUUAGUGUUUAAACCC
Stem-loop sequence CGUUUUAAAUGGUGAAAUUUGUAGAUUGGAGGGUAACCCUAGAACCCCAUUUUUGCCCAAAUUUGUGAUUUUCAACAUCCAAUUUGGGGAUUUGCUGAUUAUAGUGCU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).