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BaseInfo

ncRNA ID novel_zma_miR2957
Species Zea mays
Class miRNA
Genome position Chr4:76659152-76659288 [+]
Reference genome RefGen_v4
Source SRR2089714;SRR2287161;SRR2089699;SRR2089700
Length 24
Mature sequence(if miRNA) 1 - CUCUCUGGUCAGGCGCGGACGGUA - 24
Stem-loop(if miRNA) --   U   -      -       G  A G      --G -G  A    G       AC     -GU      G
  CUC CUG GUCAGG CGCGGAC GU C CGGCCU   G  GC GGAU GUCCGCG  CUGGC   GAGGCG C
  ||| ||| |||||| ||||||| || | ||||||   |  || |||| |||||||  |||||   ||||||
  GAG GAC UGGUCC GCGCCUG CA G GCCGGG   C  CG CCUG CAGGCGC  GACUG   UUUCGU G
UC   -   G      A       G  - -      ACA AG  -    G       -A     GUC      G
Stem-loop sequence CUCUCUGGUCAGGCGCGGACGGUACGCGGCCUGGGGCAGGAUGGUCCGCGACCUGGCGUGAGGCGGCGGUGCUUUCUGGUCAGACGCGGACGGUCCGCGACACAGGGCCGGACGGUCCGCGACCUGGUGCAGGAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ096610.1
ncRNA:24   AUGGCAGGCGCGGACUGGUCUCUC   1
  *||||||||||=||||||||||||
targets:25   GACCGUCCGCGUCUGACCAGAGAG   48

1.5 TSA: Zea mays contig32265, mRNA sequence NA coding protein psRNATarget