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BaseInfo

ncRNA ID	novel_zma_miR2955
Species	Zea mays
Class	miRNA
Genome position	Chr4:62585336-62585410 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2089715;SRR2287165;SRR2089699
Length	24
Mature sequence(if miRNA)	1 - ACUGGAUUCUUAAAAACUAGGUCG - 24
Stem-loop(if miRNA)	--                        C         U   ACUGGAUUCUUAAAAACUAGGUCG UUCCAAACA G   |||||||||||||||||||||||| ||||||||| G   UGAUUUAAGAAUUUUUGAUCCAGC AAGGUUUGU U UU                        A         C
Stem-loop sequence	ACUGGAUUCUUAAAAACUAGGUCGCUUCCAAACAUGGUCUGUUUGGAAACGACCUAGUUUUUAAGAAUUUAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU952109.1	ncRNA:24   GCUGGAUCAAAAAUUCUUAGGUCA   1   |*|=||=||||||||||||||||| targets:447   CAAUCUGGUUUUUAAGAAUCCAGU   470 Target Full Sequence	1.0	Zea mays clone 1165393 mRNA sequence	NA	coding protein	psRNATarget
XM_020539264.1	ncRNA:24   GCUGGAUCAAAAAUUCUUAGGUCA   1   |*||||||||||||||||*||||| targets:679   CAACCUAGUUUUUAAGAAACCAGU   702 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-UB (LOC100501407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539265.1	ncRNA:24   GCUGGAUCAAAAAUUCUUAGGUCA   1   |*||||||||||||||||*||||| targets:679   CAACCUAGUUUUUAAGAAACCAGU   702 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-UB (LOC100501407), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU957528.1	ncRNA:24   GCUGGAUCAAAAAUUCUUAGGUCA   1   *|||-||||||||||||||=|||| targets:2805   AGAC-UAGUUUUUAAGAAUUCAGU   2827 Target Full Sequence	1.5	Zea mays clone 1596466 anthranilate phosphoribosyltransferase-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154600.1	ncRNA:24   GCUGGAUCAAAAAUUCUUAGGUCA   1   *|||-||||||||||||||=|||| targets:2805   AGAC-UAGUUUUUAAGAAUUCAGU   2827 Target Full Sequence	1.5	Zea mays anthranilate phosphoribosyltransferase-like protein (LOC100281680), mRNA	NA	coding protein	psRNATarget
BT066043.1	ncRNA:24   GCUGGAUCAAAAAUUCUUAGGUCA   1   *|||-||||||||||||||=|||| targets:2735   AGAC-UAGUUUUUAAGAAUUCAGU   2757 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186E12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553188.1	ncRNA:24   GCUGGAUCAAAAAUUCUUAGGUCA   1   |*||=*||||||||||||*||||| targets:320   CAACUCAGUUUUUAAGAAACCAGU   343 Target Full Sequence	2.5	PREDICTED: Zea mays Uncharacterized conserved protein (UCP030365) (LOC100274461), transcript variant X2, mRNA	NA	coding protein	psRNATarget