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BaseInfo

ncRNA ID	novel_zma_miR2949
Species	Zea mays
Class	miRNA
Genome position	Chr10:474648-474734 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2089707
Length	23
Mature sequence(if miRNA)	65 - AAGGGAUGUUUGAAUGCACUAGA - 87
Stem-loop(if miRNA)	--C          UC   UU  AUUUUUCAAUCAG       AAUCUCC    GGUGUAUUUA  UGU  CU             AAUCUAC       U    ||||||||||  |||  ||             |||||||    UCACGUAAGU  GUA  GA             UUAGAUG       G AGA          UU   GG  -----------AA       CUGUAAU
Stem-loop sequence	CGGUGUAUUUAUCUGUUUCUAUUUUUCAAUCAGAAUCUACAAUCUCCUGUAAUGUCGUAGAUUAAAGGGAUGUUUGAAUGCACUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545827.1	ncRNA:23   AGAUCACGUAAGUUUGU-AGGGAA   1   |||||||||||||||||-|||||| targets:1082   UCUAGUGCAUUCAAACACUCCCUU   1105 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008678482.2	ncRNA:23   AGAUCACGUAAGUUUGUA-GGGAA   1   ||||||||||||||||||-||||| targets:3429   UCUAGUGCAUUCAAACAUUCCCUU   3452 Target Full Sequence	3.0	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001317389.1	ncRNA:23   AGAUCACGUAAGUUUGUA-GGGAA   1   ||||||||||||||||||-||||| targets:3432   UCUAGUGCAUUCAAACAUUCCCUU   3455 Target Full Sequence	3.0	Zea mays Retinoblastoma-related protein 1 (LOC100217179), mRNA	NA	coding protein	psRNATarget
XM_008678484.2	ncRNA:23   AGAUCACGUAAGUUUGUA-GGGAA   1   ||||||||||||||||||-||||| targets:3411   UCUAGUGCAUUCAAACAUUCCCUU   3434 Target Full Sequence	3.0	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008678483.2	ncRNA:23   AGAUCACGUAAGUUUGUA-GGGAA   1   ||||||||||||||||||-||||| targets:3430   UCUAGUGCAUUCAAACAUUCCCUU   3453 Target Full Sequence	3.0	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678485.2	ncRNA:23   AGAUCACGUAAGUUUGUA-GGGAA   1   ||||||||||||||||||-||||| targets:2978   UCUAGUGCAUUCAAACAUUCCCUU   3001 Target Full Sequence	3.0	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT038068.1	ncRNA:23   AGAUCACGUAAGUUUGUA-GGGAA   1   ||||||||||||||||||-||||| targets:739   UCUAGUGCAUUCAAACAUUCCCUU   762 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0210C05 mRNA, complete cds	NA	coding protein	psRNATarget
AY111966.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |=|||||||||||||||*||||| targets:225   UUUAGUGCAUUCAAACACCCCUU   247 Target Full Sequence	1.5	Zea mays CL4954_1 mRNA sequence	NA	coding protein	psRNATarget
HI403037.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |=|||||||||||||||||||*| targets:184   UUUAGUGCAUUCAAACAUCCCCU   206 Target Full Sequence	1.5	Sequence 1162 from Patent EP2074227	NA	coding protein	psRNATarget
JB163498.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |=|||||||||||||||||||*| targets:184   UUUAGUGCAUUCAAACAUCCCCU   206 Target Full Sequence	1.5	Sequence 1162 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235167.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |=|||||||||||||||||||*| targets:184   UUUAGUGCAUUCAAACAUCCCCU   206 Target Full Sequence	1.5	Sequence 1162 from Patent EP2985353	NA	coding protein	psRNATarget
EU943162.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |||||||||||||||||*||||* targets:1753   UCUAGUGCAUUCAAACACCCCUG   1775 Target Full Sequence	2.5	Zea mays clone 1574300 mRNA sequence	NA	coding protein	psRNATarget
LQ235144.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |||||||||||||||||*||||* targets:144   UCUAGUGCAUUCAAACACCCCUA   166 Target Full Sequence	2.5	Sequence 1139 from Patent EP2985353	NA	coding protein	psRNATarget
JB163475.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |||||||||||||||||*||||* targets:144   UCUAGUGCAUUCAAACACCCCUA   166 Target Full Sequence	2.5	Sequence 1139 from Patent EP2559767	NA	coding protein	psRNATarget
HI403014.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |||||||||||||||||*||||* targets:144   UCUAGUGCAUUCAAACACCCCUA   166 Target Full Sequence	2.5	Sequence 1139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235062.1	ncRNA:23   AGA-UCACGUAAGUUUGUAGGGAA   1   |||-||||||||||||||||||*| targets:9   UCUUAGUGCAUUCAAACAUCCCCU   32 Target Full Sequence	1.5	Sequence 1057 from Patent EP2985353	NA	coding protein	psRNATarget
JB163393.1	ncRNA:23   AGA-UCACGUAAGUUUGUAGGGAA   1   |||-||||||||||||||||||*| targets:9   UCUUAGUGCAUUCAAACAUCCCCU   32 Target Full Sequence	1.5	Sequence 1057 from Patent EP2559767	NA	coding protein	psRNATarget
HI402932.1	ncRNA:23   AGA-UCACGUAAGUUUGUAGGGAA   1   |||-||||||||||||||||||*| targets:9   UCUUAGUGCAUUCAAACAUCCCCU   32 Target Full Sequence	1.5	Sequence 1057 from Patent EP2074227	NA	coding protein	psRNATarget
JB163600.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:199   UAUAGUGCAUUCAAACACCCCUU   221 Target Full Sequence	1.5	Sequence 1264 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235269.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:199   UAUAGUGCAUUCAAACACCCCUU   221 Target Full Sequence	1.5	Sequence 1264 from Patent EP2985353	NA	coding protein	psRNATarget
HI403139.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:199   UAUAGUGCAUUCAAACACCCCUU   221 Target Full Sequence	1.5	Sequence 1264 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235193.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:198   UAUAGUGCAUUCAAACACCCCUU   220 Target Full Sequence	1.5	Sequence 1188 from Patent EP2985353	NA	coding protein	psRNATarget
HI403063.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:198   UAUAGUGCAUUCAAACACCCCUU   220 Target Full Sequence	1.5	Sequence 1188 from Patent EP2074227	NA	coding protein	psRNATarget
JB163524.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:198   UAUAGUGCAUUCAAACACCCCUU   220 Target Full Sequence	1.5	Sequence 1188 from Patent EP2559767	NA	coding protein	psRNATarget
JB163426.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:11   UAUAGUGCAUUCAAACACCCCUU   33 Target Full Sequence	1.5	Sequence 1090 from Patent EP2559767	NA	coding protein	psRNATarget
HI402965.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:11   UAUAGUGCAUUCAAACACCCCUU   33 Target Full Sequence	1.5	Sequence 1090 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235095.1	ncRNA:23   AGAUCACGUAAGUUUGUAGGGAA   1   |*|||||||||||||||*||||| targets:11   UAUAGUGCAUUCAAACACCCCUU   33 Target Full Sequence	1.5	Sequence 1090 from Patent EP2985353	NA	coding protein	psRNATarget