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BaseInfo

ncRNA ID novel_zma_miR2946
Species Zea mays
Class miRNA
Genome position Chr4:125861098-125861237 [-]
Reference genome RefGen_v4
Source SRR2089714;SRR2287161;SRR1997865;SRR5451003;SRR5451004
Length 24
Mature sequence(if miRNA) 117 - UUAGGGCUAGUUUGGGAGACACAA - 140
Stem-loop(if miRNA) --UU                -A  C           ---------          UUCUCCUUAUUCAA           CA
    AGGGCUAGUUUGGGAG  CA AAAACUGGAGG         GGCUAAAAUC              CCCUUCUUAUU  U
    ||||||||||||||||  || |||||||||||         ||||||||||              |||||||||||  U
    UCCCGAUCAAACCCUC  GU UUUUGACCUCC         CCGAUUUUGG              GGGAAGAAUAA  U
UGAU                AG  -           UCUAAUCUC          --------------           AU
Stem-loop sequence UUAGGGCUAGUUUGGGAGACACAAAACUGGAGGGGCUAAAAUCUUCUCCUUAUUCAACCCUUCUUAUUCAUUUUAAAUAAGAAGGGGGUUUUAGCCCUCUAAUCUCCUCCAGUUUUUGGACUCCCAAACUAGCCCUUAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI406214.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||||
targets:38   UUGUGGCUCCCAAACUAGCCCUAA   61

1.0 Sequence 4339 from Patent EP2074227 NA coding protein psRNATarget
LQ238344.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||||
targets:38   UUGUGGCUCCCAAACUAGCCCUAA   61

1.0 Sequence 4339 from Patent EP2985353 NA coding protein psRNATarget
JB166675.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||||
targets:38   UUGUGGCUCCCAAACUAGCCCUAA   61

1.0 Sequence 4339 from Patent EP2559767 NA coding protein psRNATarget
XM_008677028.2
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||||
targets:2455   UUGUGGCUCCCAAACUAGCCCUAA   2478

1.0 PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550525.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||||
targets:2473   UUGUGGCUCCCAAACUAGCCCUAA   2496

1.0 PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA NA coding protein psRNATarget
EZ074100.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  ||||||=||||||||||*||||||
targets:242   UUGUGUUUCCCAAACUAUCCCUAA   265

2.5 TSA: Zea mays contig09737, mRNA sequence NA coding protein psRNATarget
XM_020539411.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*=|||||||||||||||||
targets:3524   UUGUGGUUCCCAAACUAGCCCUAA   3547

2.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020539397.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*=|||||||||||||||||
targets:3559   UUGUGGUUCCCAAACUAGCCCUAA   3582

2.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA NA coding protein psRNATarget
X70154.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||*|
targets:280   UUGUGGCUCCCAAACUAGCCCUUA   303

2.5 Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152) NA coding protein psRNATarget
NM_001111958.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||*|
targets:1222   UUGUGGCUCCCAAACUAGCCCUUA   1245

2.5 Zea mays protein b-32 (O6), mRNA NA coding protein psRNATarget
X54212.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||*|
targets:1222   UUGUGGCUCCCAAACUAGCCCUUA   1245

2.5 Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120) NA coding protein psRNATarget
AY109436.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||||*||||||||||||||||*|
targets:1222   UUGUGGCUCCCAAACUAGCCCUUA   1245

2.5 Zea mays CL1124_1 mRNA sequence NA coding protein psRNATarget
BT069551.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||*|*=|||||||||||||||||
targets:323   UUGAGGUUCCCAAACUAGCCCUAA   346

2.0 Zea mays full-length cDNA clone ZM_BFb0167A20 mRNA, complete cds NA coding protein psRNATarget
XM_008662350.2
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||-|*||||||||||||||||||
targets:5310   UUG-GACUCCCAAACUAGCCCUAA   5332

1.0 PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA NA coding protein psRNATarget
AY111263.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  *||*||=|=|=|||||||||||||
targets:423   AUGGGUUUUCUAAACUAGCCCUAA   446

3.0 Zea mays CL8731_1 mRNA sequence NA coding protein psRNATarget
EZ068772.1
ncRNA:24   AA---CACAGAGGGUUUGAUCGGGAUU   1
  ||---|||*=|=|||||||||||||||
targets:46   UUAGAGUGGUUUCCAAACUAGCCCUAA   72

3.0 TSA: Zea mays contig04407, mRNA sequence NA coding protein psRNATarget
BT065170.1
ncRNA:24   AACACA-GAGGGUUUGAUCGGGAUU   1
  ||*||*-||||||||||||||||||
targets:707   UUUUGAACUCCCAAACUAGCCCUAA   731

3.0 Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds NA coding protein psRNATarget
XM_008670893.2
ncRNA:24   AACACA-GAGGGUUUGAUCGGGAUU   1
  ||*||*-||||||||||||||||||
targets:1587   UUUUGAACUCCCAAACUAGCCCUAA   1611

3.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008670890.2
ncRNA:24   AACACA-GAGGGUUUGAUCGGGAUU   1
  ||*||*-||||||||||||||||||
targets:1607   UUUUGAACUCCCAAACUAGCCCUAA   1631

3.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670892.2
ncRNA:24   AACACA-GAGGGUUUGAUCGGGAUU   1
  ||*||*-||||||||||||||||||
targets:1631   UUUUGAACUCCCAAACUAGCCCUAA   1655

3.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008670891.2
ncRNA:24   AACACA-GAGGGUUUGAUCGGGAUU   1
  ||*||*-||||||||||||||||||
targets:1664   UUUUGAACUCCCAAACUAGCCCUAA   1688

3.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667867.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |*|||*|||||||||||||*||||
targets:1055   UCGUGGCUCCCAAACUAGCGCUAA   1078

2.5 PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA NA coding protein psRNATarget
XM_008656331.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  |||*-|=|||=|||||||||||||
targets:4   UUGA-UUUCCUAAACUAGCCCUAA   26

2.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100272998), transcript variant X2, mRNA NA coding protein psRNATarget
EU951374.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  *||*|*=|=|||||||||||||||
targets:416   AUGGGGUUUCCAAACUAGCCCUAA   439

3.0 Zea mays clone 697858 mRNA sequence NA coding protein psRNATarget
XM_020544055.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  *||*|*=|=|||||||||||||||
targets:1890   AUGGGAUUUCCAAACUAGCCCUAA   1913

3.0 PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008662239.2
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  *||*|*=|=|||||||||||||||
targets:1910   AUGGGAUUUCCAAACUAGCCCUAA   1933

3.0 PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X3, mRNA NA coding protein psRNATarget
EU942501.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGA-UU   1
  |****|||||||||||||||||-||
targets:289   UCCCUUCUCCCAAACUAGCCCUCAA   313

3.0 Zea mays clone 1511507 mRNA sequence NA coding protein psRNATarget
XM_008674728.2
ncRNA:24   AACA--CAGAGGGUUUGAUCGGGAUU   1
  ||*|--|*||||||||||||||||*|
targets:724   UUUUCGGGCUCCCAAACUAGCCCUUA   749

2.5 PREDICTED: Zea mays 60S ribosomal protein L18A (LOC100284168), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001349004.1
ncRNA:24   AACACAGAGGGUUUGAUCGGGAUU   1
  *|*||||**=||||||||||||||
targets:378   CUAUGUCCAUCAAACUAGCCCUAA   401

3.0 Zea mays uncharacterized LOC100277479 (LOC100277479), transcript variant 3, mRNA NA coding protein psRNATarget
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