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BaseInfo

ncRNA ID	novel_zma_miR2940
Species	Zea mays
Class	miRNA
Genome position	Chr6:145293568-145293653 [-]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647385;SRR2647386;SRR2647388
Length	24
Mature sequence(if miRNA)	1 - AUAUUGAUUUCGUAGCAACGCACG - 24
Stem-loop(if miRNA)	--           A               C     UU   AUA   UGUGUUGUUAC AAAUUAAUAUGAUAA AUACA  GAU   C   ||||||||||| ||||||||||||||| |||||  |||   ACGCAACGAUG UUUAGUUAUAUUAUU UAUGU  UUA   C GC           C               U     UG   AAA
Stem-loop sequence	UGUGUUGUUACAAAAUUAAUAUGAUAACAUACAUUGAUAUACCAAAAUUGUUGUAUUUUAUUAUAUUGAUUUCGUAGCAACGCACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU947553.1	ncRNA:24   GCACGCAACGAUGCUUUAGUUAUA   1   |||||||||||||||||||||||| targets:852   CGUGCGUUGCUACGAAAUCAAUAU   875 Target Full Sequence	0.0	Zea mays clone 346992 mRNA sequence	NA	coding protein	psRNATarget
BT040517.1	ncRNA:24   GCACGCAACGAUGCUUUAGUUAUA   1   ||||||||||||||=||||||||| targets:595   CGUGCGUUGCUACGGAAUCAAUAU   618 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0098J20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165433.1	ncRNA:24   GCACGCAACGAUGCUUUAGUUAUA   1   ||||||||||||||=||||||||| targets:595   CGUGCGUUGCUACGGAAUCAAUAU   618 Target Full Sequence	1.5	Zea mays AtS40-3 (LOC100303799), mRNA	NA	coding protein	psRNATarget
EU967295.1	ncRNA:24   GCACGCAACGAUGCUUUAGUUAUA   1   ||||||||||||||=||||||||| targets:671   CGUGCGUUGCUACGGAAUCAAUAU   694 Target Full Sequence	1.5	Zea mays clone 301197 nuclear protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157052.1	ncRNA:24   GCACGCAACGAUGCUUUAGUUAUA   1   ||||||||||||||=||||||||| targets:671   CGUGCGUUGCUACGGAAUCAAUAU   694 Target Full Sequence	1.5	Zea mays nuclear protein (LOC100284155), mRNA	NA	coding protein	psRNATarget
NM_001112604.2	ncRNA:24   GCACGCAACGAUGCUUUAGUUAUA   1   =*|*=||||=|||||||||||||| targets:1402   UAUAUGUUGUUACGAAAUCAAUAU   1425 Target Full Sequence	1.0	Zea mays anthocyaninless 2 (a2), mRNA	NA	coding protein	psRNATarget
X55314.1	ncRNA:24   GCACGCAACGAUGCUUUAGUUAUA   1   =*|*=||||=|||||||||||||| targets:2660   UAUAUGUUGUUACGAAAUCAAUAU   2683 Target Full Sequence	1.0	Zea mays A2 gene	NA	coding protein	psRNATarget