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BaseInfo

ncRNA ID novel_zma_miR2936
Species Zea mays
Class miRNA
Genome position Chr4:217017503-217017623 [+]
Reference genome RefGen_v4
Source SRR2089714
Length 24
Mature sequence(if miRNA) 1 - UGUUAUUUUCGGCGGCCAGGAAGC - 24
Stem-loop(if miRNA) --UG                  AAG  -A             A   -            CA G
    UUAUUUUCGGCGGCCAGG   CC  GCCGCCGGAAAUA GCU AUUUUCGGCGGC  G A
    ||||||||||||||||||   ||  ||||||||||||| ||| ||||||||||||  |
    AAUGAAAGCCGCCGGUCC   GG  CGGCGGCUUUUAU CGA UAAAGGCCGCCG  C A
CCGA                  --G  AC             -   A            AC G
Stem-loop sequence UGUUAUUUUCGGCGGCCAGGAAGCCAGCCGCCGGAAAUAAGCUAUUUUCGGCGGCCAGGAAGCCAGCCGCCGGAAAUAAGCUAUUUUCGGCGGCCAGGGCCUGGCCGCCGAAAGUAAAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020544519.1
ncRNA:24   CGAAGGACCGGCGGCUUUUAUUGU   1
  ||--||||||||||||||||||*|
targets:100   GC--CCUGGCCGCCGAAAAUAAAA   121

1.5 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942470), mRNA NA coding protein psRNATarget
XM_020546193.1
ncRNA:24   CGAAGGACCGGCGGCUUUUAUUGU   1
  |||--|||||||||||||||||*=
targets:517   GCU--CUGGCCGCCGAAAAUAAGG   538

2.5 PREDICTED: Zea mays spidroin-1-like (LOC103636899), mRNA NA coding protein psRNATarget