ncRNA ID | novel_zma_miR2936 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr4:217017503-217017623 [+] |
Reference genome | RefGen_v4 |
Source | SRR2089714 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGUUAUUUUCGGCGGCCAGGAAGC - 24 |
Stem-loop(if miRNA) |
--UG                  AAG  -A             A   -            CA G     UUAUUUUCGGCGGCCAGG   CC  GCCGCCGGAAAUA GCU AUUUUCGGCGGC  G A     ||||||||||||||||||   ||  ||||||||||||| ||| ||||||||||||  |     AAUGAAAGCCGCCGGUCC   GG  CGGCGGCUUUUAU CGA UAAAGGCCGCCG  C A CCGA                  --G  AC             -   A            AC G |
Stem-loop sequence | UGUUAUUUUCGGCGGCCAGGAAGCCAGCCGCCGGAAAUAAGCUAUUUUCGGCGGCCAGGAAGCCAGCCGCCGGAAAUAAGCUAUUUUCGGCGGCCAGGGCCUGGCCGCCGAAAGUAAAGCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020544519.1 |
|
1.5 | PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942470), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020546193.1 |
|
2.5 | PREDICTED: Zea mays spidroin-1-like (LOC103636899), mRNA | NA | coding protein | psRNATarget |