Search result

BaseInfo

ncRNA ID	novel_zma_miR2933
Species	Zea mays
Class	miRNA
Genome position	Chr6:153402087-153402244 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - CGUUUGGUUGCCUGGUUUUGGCCC - 24
Stem-loop(if miRNA)	--         UC U     UG   CAACUA    AUUUCGAACCUUUUAUUCAGC    AUUGUCGUGUUUUCUCCCCACCUAGAAGUGUA   GCUAAGACC  G GCAAC  GAC      GCCC                     UAGA                                G   |||||||||  | |||||  |||      ||||                     ||||   CGGUUUUGG  C CGUUG  UUG      CGGG                     AUCG                                U CC         -U -     GU   ----CG    --------------------A    GAAACAUUACAUGAUAUAUUUUAAUAGGAUUC
Stem-loop sequence	GCUAAGACCUCGUGCAACUGGACCAACUAGCCCAUUUCGAACCUUUUAUUCAGCUAGAAUUGUCGUGUUUUCUCCCCACCUAGAAGUGUAGUCUUAGGAUAAUUUUAUAUAGUACAUUACAAAGGCUAAGGGCGCGUUUGGUUGCCUGGUUUUGGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008657246.2	ncRNA:24   CCCGGUUUUGGUCCGUUGGUUUGC   1   ****|||||||*|||||||||||* targets:207   CCAACAAAACCCGGCAACCAAACA   230 Target Full Sequence	2.5	PREDICTED: Zea mays Os05g0140333-like protein (LOC103634646), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657243.2	ncRNA:24   CCCGGUUUUGGUCCGUUGGUUUGC   1   ****|||||||*|||||||||||* targets:207   CCAACAAAACCCGGCAACCAAACA   230 Target Full Sequence	2.5	PREDICTED: Zea mays Os05g0140333-like protein (LOC103634646), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657245.2	ncRNA:24   CCCGGUUUUGGUCCGUUGGUUUGC   1   ****|||||||*|||||||||||* targets:207   CCAACAAAACCCGGCAACCAAACA   230 Target Full Sequence	2.5	PREDICTED: Zea mays Os05g0140333-like protein (LOC103634646), transcript variant X2, mRNA	NA	coding protein	psRNATarget