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BaseInfo

ncRNA ID	novel_zma_miR2926
Species	Zea mays
Class	miRNA
Genome position	Chr4:137101913-137101960 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - CCCACAGGCACGGACUGUCCGGAC - 24
Stem-loop(if miRNA)	--   AC    A           G   CCC  AGGC CGGACUGUCCG A   |||  |||| ||||||||||| C   GGG  UCCG GUCUGAUAGGC C CC   AC    -           G
Stem-loop sequence	CCCACAGGCACGGACUGUCCGGACCGCGGAUAGUCUGGCCUCAGGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949855.1	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||||||||*||||||||| targets:409   GUCCGGACAGUCCGCGCCUGUGGG   432 Target Full Sequence	1.5	Zea mays clone 449025 mRNA sequence	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||||||||*||||||||| targets:1918   GUCCGGACAGUCCGCGCCUGUGGG   1941 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||||||||*||||||||| targets:1918   GUCCGGACAGUCCGCGCCUGUGGG   1941 Target Full Sequence	1.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658262.2	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||||||||*||||||||| targets:2666   GUCCGGACAGUCCGCGCCUGUGGG   2689 Target Full Sequence	1.5	PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658263.2	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||||||||*||||||||| targets:2767   GUCCGGACAGUCCGCGCCUGUGGG   2790 Target Full Sequence	1.5	PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||=|||||*||||||||| targets:843   GUCCGGACGGUCCGCGCCUGUGGG   866 Target Full Sequence	2.5	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||=|||||*||||||||| targets:1434   GUCCGGACGGUCCGCGCCUGUGGG   1457 Target Full Sequence	2.5	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||=|||||*||||||||| targets:1434   GUCCGGACGGUCCGCGCCUGUGGG   1457 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
BT018646.1	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||||||=|||||*||||||||| targets:1569   GUCCGGACGGUCCGCGCCUGUGGG   1592 Target Full Sequence	2.5	Zea mays clone EL01N0505C04.d mRNA sequence	NA	coding protein	psRNATarget
EU943239.1	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   ||||*|||=|||||*||||||||| targets:321   GUCCAGACGGUCCGCGCCUGUGGG   344 Target Full Sequence	2.5	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget
BT055995.2	ncRNA:24   CAGGCCUGUCAGGCACGGACACCC   1   *|=|||||*|||||||||||||*| targets:342   CUUCGGACCGUCCGUGCCUGUGUG   365 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0107G24 mRNA, complete cds	NA	coding protein	psRNATarget