Search result

BaseInfo

ncRNA ID	novel_zma_miR2924
Species	Zea mays
Class	miRNA
Genome position	Chr3:114388161-114388328 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	21
Mature sequence(if miRNA)	1 - GCUGAUUUGGUGGAUAGGGAU - 21
Stem-loop(if miRNA)	--                                                     G         CGAGG    CCAU      G   GCUGAUUUGGUGGAUAGGGAUCACGAGGGGAUCCAUGGGUGAGGAAUCCCCUU CUAUUCAAA     GGAU    GGGGGA U   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     ||||    ||||||   UGAUUAAACCACCUGUCCCUAGUGUUCCCCUAGGUACCCACUCCUUAGGGGAA GAUAAGUUU     CUUA    UCCCUU A CC                                                     A         --UAA    UCGU      A
Stem-loop sequence	GCUGAUUUGGUGGAUAGGGAUCACGAGGGGAUCCAUGGGUGAGGAAUCCCCUUGCUAUUCAAACGAGGGGAUCCAUGGGGGAGUAAUUCCCUUGCUAUUCAAUUUUGAAUAGAAAGGGGAUUCCUCACCCAUGGAUCCCCUUGUGAUCCCUGUCCACCAAAUUAGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY108273.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   ||||||||=|||||||||||= targets:454   AUCCCUAUUCACCAAAUCAGU   474 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_020552919.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   *|||||=|||||||||||||| targets:1608   UUCCCUGUCCACCAAAUCAGC   1628 Target Full Sequence	1.0	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552918.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   *|||||=|||||||||||||| targets:2261   UUCCCUGUCCACCAAAUCAGC   2281 Target Full Sequence	1.0	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   |||||||*||||||||||||| targets:1339   AUCCCUAACCACCAAAUCAGC   1359 Target Full Sequence	1.0	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
BT066676.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   |||||||*||||||||||||| targets:1339   AUCCCUAACCACCAAAUCAGC   1359 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
HI402947.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   |||||||*=|||||||||||| targets:114   AUCCCUAAUCACCAAAUCAGC   134 Target Full Sequence	2.5	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235077.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   |||||||*=|||||||||||| targets:114   AUCCCUAAUCACCAAAUCAGC   134 Target Full Sequence	2.5	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget
JB163408.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   |||||||*=|||||||||||| targets:114   AUCCCUAAUCACCAAAUCAGC   134 Target Full Sequence	2.5	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   |||||||*=|||||||||||| targets:152   AUCCCUAAUCACCAAAUCAGC   172 Target Full Sequence	2.5	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
BT038234.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   *|=|||||||||||||*|||| targets:1109   UUUCCUAUCCACCAAACCAGC   1129 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0220G01 mRNA, complete cds	NA	coding protein	psRNATarget
BT038688.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   *|=|||||||||||||*|||| targets:1234   UUUCCUAUCCACCAAACCAGC   1254 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0309H03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146901.1	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   *|=|||||||||||||*|||| targets:1234   UUUCCUAUCCACCAAACCAGC   1254 Target Full Sequence	2.5	Zea mays UMP-CMP kinase 3 (LOC100272426), mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   UAGGGAUAGGUGGUUUAGUCG   1   ||||*||*||||||||||||= targets:1209   AUCCAUAGCCACCAAAUCAGU   1229 Target Full Sequence	3.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget