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BaseInfo

ncRNA ID novel_zma_miR2918
Species Zea mays
Class miRNA
Genome position Chr3:4901671-4901723 [-]
Reference genome RefGen_v4
Source SRR2089714;SRR2287161;SRR2287163;SRR1997865;SRR5100255;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - ACCGGACUGUUCGGUGCACCCAUC - 24
Stem-loop(if miRNA) --- C  C          CU        
   G GG GCACCGGACA  GUCUGGUGG
   | || ||||||||||  ||||||||C
   C CC CGUGGCUUGU  CAGGCCACG
CUA -  A          --        
Stem-loop sequence GCGGCGCACCGGACACUGUCUGGUGGCGCACCGGACUGUUCGGUGCACCCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001174416.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |||||||||||||=||||||||||
targets:587   GAUGGGUGCACCGGACAGUCCGGU   610

1.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  *=**|||||||||=||||||||||
targets:821   CGCUGGUGCACCGGACAGUCCGGU   844

1.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT061709.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |||||||||||||=||||||||||
targets:587   GAUGGGUGCACCGGACAGUCCGGU   610

1.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT061709.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  *=**|||||||||=||||||||||
targets:821   CGCUGGUGCACCGGACAGUCCGGU   844

1.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
EZ108756.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ||||||*||||||=||||||||||
targets:144   GAUGGGCGCACCGGACAGUCCGGU   167

2.5 TSA: Zea mays contig44415, mRNA sequence NA coding protein psRNATarget
BT065201.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |**||||||||||=||||||||||
targets:584   GUCGGGUGCACCGGACAGUCCGGU   607

1.5 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |**||||||||||=||||||||||
targets:136   GUCGGGUGCACCGGACAGUCCGGU   159

1.5 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT069074.2
ncRNA:24   CU-AC----CCACGUGGCUUGUCAGGCCA   1
  ||-||----|||||||||=||||||||||
targets:756   GAGUGCCCUGGUGCACCGGACAGUCCGGU   784

1.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
JB170574.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ||**|||||||||=||||||||||
targets:147   GAGUGGUGCACCGGACAGUCCGGU   170

1.5 Sequence 8238 from Patent EP2559767 NA coding protein psRNATarget
LQ242243.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ||**|||||||||=||||||||||
targets:147   GAGUGGUGCACCGGACAGUCCGGU   170

1.5 Sequence 8238 from Patent EP2985353 NA coding protein psRNATarget
HI410113.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ||**|||||||||=||||||||||
targets:147   GAGUGGUGCACCGGACAGUCCGGU   170

1.5 Sequence 8238 from Patent EP2074227 NA coding protein psRNATarget
LQ241540.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ****|||||||||=||||||||||
targets:91   CCCUGGUGCACCGGACAGUCCGGU   114

1.5 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
HI409410.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ****|||||||||=||||||||||
targets:91   CCCUGGUGCACCGGACAGUCCGGU   114

1.5 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
JB169871.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ****|||||||||=||||||||||
targets:91   CCCUGGUGCACCGGACAGUCCGGU   114

1.5 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
BT086229.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |***|||||||||=||||||||||
targets:828   GCCUGGUGCACCGGACAGUCCGGU   851

1.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   CUA-CCCACGUGGCUUGUCAGGCCA   1
  *||-|||*||||||=||||||||||
targets:482   CAUCGGGCGCACCGGACAGUCCGGU   506

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   CUAC-CCACGUGGCUUGUCAGGCCA   1
  |||*-||*||||||=||||||||||
targets:578   GAUCUGGCGCACCGGACAGUCCGGU   602

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   CUA-CCCACGUGGCUUGUCAGGCCA   1
  *||-|||*||||||=||||||||||
targets:482   CAUCGGGCGCACCGGACAGUCCGGU   506

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   CUAC-CCACGUGGCUUGUCAGGCCA   1
  |||*-||*||||||=||||||||||
targets:578   GAUCUGGCGCACCGGACAGUCCGGU   602

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   CUA-CCCACGUGGCUUGUCAGGCCA   1
  *||-|||*||||||=||||||||||
targets:4376   CAUCGGGCGCACCGGACAGUCCGGU   4400

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
BT068112.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |***||*||||||=||||||||||
targets:374   GUCUGGCGCACCGGACAGUCCGGU   397

2.5 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |**|||*||||||=||||||||||
targets:495   GUCGGGCGCACCGGACAGUCCGGU   518

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |**|||*||||||=||||||||||
targets:495   GUCGGGCGCACCGGACAGUCCGGU   518

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  *|*|||*||||||=||||||||||
targets:330   CACGGGCGCACCGGACAGUCCGGU   353

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  *|*|||*||||||=||||||||||
targets:330   CACGGGCGCACCGGACAGUCCGGU   353

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
EU940974.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ||**||*||||||=||||||||||
targets:2538   GACUGGCGCACCGGACAGUCCGGU   2561

2.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
BT065921.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  *=|*||*||||||=||||||||||
targets:599   CGUUGGCGCACCGGACAGUCCGGU   622

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |***||*||||||=||||||||||
targets:503   GCCUGGCGCACCGGACAGUCCGGU   526

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  *=|*||*||||||=||||||||||
targets:599   CGUUGGCGCACCGGACAGUCCGGU   622

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |***||*||||||=||||||||||
targets:503   GCCUGGCGCACCGGACAGUCCGGU   526

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT066013.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ||**||*||||||=||||||||||
targets:489   GAGUGGCGCACCGGACAGUCCGGU   512

2.5 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
BT066013.2
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |***||*||||||=||||||||||
targets:778   GCCUGGCGCACCGGACAGUCCGGU   801

2.5 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  ||**||*||||||=||||||||||
targets:489   GAGUGGCGCACCGGACAGUCCGGU   512

2.5 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   CUACCCACGUGGCUUGUCAGGCCA   1
  |***||*||||||=||||||||||
targets:778   GCCUGGCGCACCGGACAGUCCGGU   801

2.5 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
EZ065990.1
ncRNA:21   CCCACGUGGCUUGUCAGGCCA   1
  *||*||||||=||||||||||
targets:1   UGGCGCACCGGACAGUCCGGU   21

2.5 TSA: Zea mays contig01624, mRNA sequence NA coding protein psRNATarget
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