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BaseInfo

ncRNA ID novel_zma_miR2911
Species Zea mays
Class miRNA
Genome position Chr3:179460831-179460954 [-]
Reference genome RefGen_v4
Source SRR2089714
Length 24
Mature sequence(if miRNA) 1 - CUUUUUGUGAGGGGCUGCAAACAC - 24
Stem-loop(if miRNA) --                     A    UG      CCU   UACAGGUCCACGAGAUAACGUU
  GUUUGCAGCCCCUCACAAAAA AAGA  AUAGAC   ACC                      U
  ||||||||||||||||||||| ||||  ||||||   |||
  CAAACGUCGGGGAGUGUUUUU UUCU  UAUCUG   GUG                      U
CA                     C    --      --A   AGCGUCGUCGUUAUUGUGUUGA
Stem-loop sequence GUUUGCAGCCCCUCACAAAAAAAAGAUGAUAGACCCUACCUACAGGUCCACGAGAUAACGUUUUAGUUGUGUUAUUGCUGCUGCGAGUGAGUCUAUUCUUCUUUUUGUGAGGGGCUGCAAACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
X55314.1
ncRNA:24   CAC-AAACGUCGGGGAGUGUUUUUC   1
  |||-|||||||||||||||||||||
targets:912   GUGGUUUGCAGCCCCUCACAAAAAG   936

0.0 Zea mays A2 gene NA coding protein psRNATarget
XM_008679788.2
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||||||=|||||||||||||
targets:479   AUGUUUGCAGUCCCUCACAAAAAG   502

1.0 PREDICTED: Zea mays uncharacterized LOC103652812 (LOC103652812), transcript variant X1, mRNA NA coding protein psRNATarget
JB163679.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||||||||*
targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34

1.0 Sequence 1343 from Patent EP2559767 NA coding protein psRNATarget
JB163689.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||||||||*
targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34

1.0 Sequence 1353 from Patent EP2559767 NA coding protein psRNATarget
HI403228.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||||||||*
targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34

1.0 Sequence 1353 from Patent EP2074227 NA coding protein psRNATarget
LQ235348.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||||||||*
targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34

1.0 Sequence 1343 from Patent EP2985353 NA coding protein psRNATarget
LQ235358.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||||||||*
targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34

1.0 Sequence 1353 from Patent EP2985353 NA coding protein psRNATarget
HI403218.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||||||||*
targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34

1.0 Sequence 1343 from Patent EP2074227 NA coding protein psRNATarget
XM_008653247.2
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||||||||*
targets:26   CUGUUUGCAGCCCCUCACAAAAAU   49

1.0 PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA NA coding protein psRNATarget
XM_020547144.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||||||||*
targets:143   CUGUUUGCAGCCCCUCACAAAAAU   166

1.0 PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA NA coding protein psRNATarget
XM_008657979.2
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||||||=||||||=||||||
targets:1398   AUGUUUGCAGUCCCUCAUAAAAAG   1421

2.5 PREDICTED: Zea mays annexin-like protein RJ4 (LOC103635552), mRNA NA coding protein psRNATarget
JB163811.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||=|||||*
targets:10   CUGUUUGCAGCCCCUCAUAAAAAA   33

2.5 Sequence 1475 from Patent EP2559767 NA coding protein psRNATarget
HI403387.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||=|||||*
targets:10   CUGUUUGCAGCCCCUCAUAAAAAA   33

2.5 Sequence 1512 from Patent EP2074227 NA coding protein psRNATarget
LQ235480.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||=|||||*
targets:10   CUGUUUGCAGCCCCUCAUAAAAAA   33

2.5 Sequence 1475 from Patent EP2985353 NA coding protein psRNATarget
JB163848.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||=|||||*
targets:10   CUGUUUGCAGCCCCUCAUAAAAAA   33

2.5 Sequence 1512 from Patent EP2559767 NA coding protein psRNATarget
HI403350.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||=|||||*
targets:10   CUGUUUGCAGCCCCUCAUAAAAAA   33

2.5 Sequence 1475 from Patent EP2074227 NA coding protein psRNATarget
LQ235517.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *||||||||||||||||=|||||*
targets:10   CUGUUUGCAGCCCCUCAUAAAAAA   33

2.5 Sequence 1512 from Patent EP2985353 NA coding protein psRNATarget
LQ235188.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||||||||=||||||||||*
targets:10   CUGUUUGCAGCCUCUCACAAAAAU   33

2.5 Sequence 1183 from Patent EP2985353 NA coding protein psRNATarget
HI403058.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||||||||=||||||||||*
targets:10   CUGUUUGCAGCCUCUCACAAAAAU   33

2.5 Sequence 1183 from Patent EP2074227 NA coding protein psRNATarget
JB163519.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||||||||=||||||||||*
targets:10   CUGUUUGCAGCCUCUCACAAAAAU   33

2.5 Sequence 1183 from Patent EP2559767 NA coding protein psRNATarget
XM_020545800.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  **|||||||||||||||||||||*
targets:871   CCGUUUGCAGCCCCUCACAAAAAU   894

1.0 PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA NA coding protein psRNATarget
XM_020547635.1
ncRNA:24   CAC-AAACGUCGGGGAGUGUUUUUC   1
  |||-||||||||=|||||||||||*
targets:2444   GUGGUUUGCAGCUCCUCACAAAAAA   2468

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020547631.1
ncRNA:24   CAC-AAACGUCGGGGAGUGUUUUUC   1
  |||-||||||||=|||||||||||*
targets:3344   GUGGUUUGCAGCUCCUCACAAAAAA   3368

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547630.1
ncRNA:24   CAC-AAACGUCGGGGAGUGUUUUUC   1
  |||-||||||||=|||||||||||*
targets:3361   GUGGUUUGCAGCUCCUCACAAAAAA   3385

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547634.1
ncRNA:24   CAC-AAACGUCGGGGAGUGUUUUUC   1
  |||-||||||||=|||||||||||*
targets:4219   GUGGUUUGCAGCUCCUCACAAAAAA   4243

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547633.1
ncRNA:24   CAC-AAACGUCGGGGAGUGUUUUUC   1
  |||-||||||||=|||||||||||*
targets:4222   GUGGUUUGCAGCUCCUCACAAAAAA   4246

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020547632.1
ncRNA:24   CAC-AAACGUCGGGGAGUGUUUUUC   1
  |||-||||||||=|||||||||||*
targets:4240   GUGGUUUGCAGCUCCUCACAAAAAA   4264

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547629.1
ncRNA:24   CAC-AAACGUCGGGGAGUGUUUUUC   1
  |||-||||||||=|||||||||||*
targets:4242   GUGGUUUGCAGCUCCUCACAAAAAA   4266

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001137162.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||*|||=|||||||||||||
targets:2077   AUGUUUACAGUCCCUCACAAAAAG   2100

2.0 Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA NA coding protein psRNATarget
BT033928.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||*|||=|||||||||||||
targets:2077   AUGUUUACAGUCCCUCACAAAAAG   2100

2.0 Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds NA coding protein psRNATarget
XM_008682759.2
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||*|||=|||||||||||||
targets:2515   AUGUUUACAGUCCCUCACAAAAAG   2538

2.0 PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008682758.2
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|||||*|||=|||||||||||||
targets:2518   AUGUUUACAGUCCCUCACAAAAAG   2541

2.0 PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA NA coding protein psRNATarget
JB163804.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|*|||||||=||||||||||||*
targets:11   CUAUUUGCAGUCCCUCACAAAAAA   34

2.0 Sequence 1468 from Patent EP2559767 NA coding protein psRNATarget
HI403343.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|*|||||||=||||||||||||*
targets:11   CUAUUUGCAGUCCCUCACAAAAAA   34

2.0 Sequence 1468 from Patent EP2074227 NA coding protein psRNATarget
LQ235473.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  *|*|||||||=||||||||||||*
targets:11   CUAUUUGCAGUCCCUCACAAAAAA   34

2.0 Sequence 1468 from Patent EP2985353 NA coding protein psRNATarget
EU969856.1
ncRNA:24   CACAAACGUCGGGGAGUGUUUUUC   1
  |||**||||||=|||||||||||*
targets:1067   GUGCAUGCAGCUCCUCACAAAAAA   1090

2.5 Zea mays clone 336516 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB170491.1
ncRNA:20   AACGUCGGGGAGUGUUUUUC   1
  |||||*=|||||||||||||
targets:1   UUGCAUUCCCUCACAAAAAG   20

2.0 Sequence 8155 from Patent EP2559767 NA coding protein psRNATarget
LQ242160.1
ncRNA:20   AACGUCGGGGAGUGUUUUUC   1
  |||||*=|||||||||||||
targets:1   UUGCAUUCCCUCACAAAAAG   20

2.0 Sequence 8155 from Patent EP2985353 NA coding protein psRNATarget
HI410030.1
ncRNA:20   AACGUCGGGGAGUGUUUUUC   1
  |||||*=|||||||||||||
targets:1   UUGCAUUCCCUCACAAAAAG   20

2.0 Sequence 8155 from Patent EP2074227 NA coding protein psRNATarget
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