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BaseInfo

ncRNA ID	novel_zma_miR2906
Species	Zea mays
Class	miRNA
Genome position	Chr3:207272563-207272666 [-]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2287160
Length	24
Mature sequence(if miRNA)	1 - AUGUGGAUUGAGGUUAAUACUAGA - 24
Stem-loop(if miRNA)	--           C                  A       ---A   A    A   UAGUAUUAACC CAAUCCACAUGUGUUGAG UGGAUUG    GAU UAAA U   ||||||||||| |||||||||||||||||| |||||||    ||| |||| U   AUCAUAAUUGG GUUAGGUGUACAUAACUC ACCUAAC    UUG AUUU A AG           A                  C       CCCA   A    G
Stem-loop sequence	UAGUAUUAACCCCAAUCCACAUGUGUUGAGAUGGAUUGAGAUAUAAAAUUAGUUUAAGUUACCCCAAUCCACCUCAAUACAUGUGGAUUGAGGUUAAUACUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235491.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||||||||||||||||| targets:1   UCUAGUAUUAACCUCAAUCCACAU   24 Target Full Sequence	0.0	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
HI403361.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||||||||||||||||| targets:1   UCUAGUAUUAACCUCAAUCCACAU   24 Target Full Sequence	0.0	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
JB163822.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||||||||||||||||| targets:1   UCUAGUAUUAACCUCAAUCCACAU   24 Target Full Sequence	0.0	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020543503.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1810   UCUAGUAUUGACCUCAAUCCACAU   1833 Target Full Sequence	1.0	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1809   UCUAGUAUUGACCUCAAUCCACAU   1832 Target Full Sequence	1.0	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540612.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||||||||||||=||||| targets:1702   UCUAGUAUUAACCUCAAUUCACAU   1725 Target Full Sequence	1.5	PREDICTED: Zea mays membrane protein (LOC100381468), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||||||||||||=||||| targets:853   UCUAGUAUUAACCUCAAUUCACAU   876 Target Full Sequence	1.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
EU955100.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||||||||||||=||||| targets:633   UCUAGUAUUAACCUCAAUUCACAU   656 Target Full Sequence	1.5	Zea mays clone 1509994 membrane protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001326691.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||||||||||||=||||| targets:633   UCUAGUAUUAACCUCAAUUCACAU   656 Target Full Sequence	1.5	Zea mays membrane protein (LOC100381468), mRNA	NA	coding protein	psRNATarget
JB163837.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
JB163782.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
HI403376.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
HI403229.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
JB163781.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
HI403320.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
JB163690.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
HI403321.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235449.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1444 from Patent EP2985353	NA	coding protein	psRNATarget
HI403319.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1444 from Patent EP2074227	NA	coding protein	psRNATarget
JB163780.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1444 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008646892.2	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||=|| targets:3307   UCUAGUAUUGACCUCAAUCCAUAU   3330 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646891.2	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||=|| targets:3212   UCUAGUAUUGACCUCAAUCCAUAU   3235 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646893.2	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||||||=|| targets:3126   UCUAGUAUUGACCUCAAUCCAUAU   3149 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA	NA	coding protein	psRNATarget
JB163769.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=||=||||||||||| targets:1   UCUAGUAUUGACUUCAAUCCACAU   24 Target Full Sequence	2.5	Sequence 1433 from Patent EP2559767	NA	coding protein	psRNATarget
HI403308.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=||=||||||||||| targets:1   UCUAGUAUUGACUUCAAUCCACAU   24 Target Full Sequence	2.5	Sequence 1433 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235438.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=||=||||||||||| targets:1   UCUAGUAUUGACUUCAAUCCACAU   24 Target Full Sequence	2.5	Sequence 1433 from Patent EP2985353	NA	coding protein	psRNATarget
HI403017.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||=|||||||||||||| targets:1   CUAGUAUUGACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
HI403075.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||=|||||||||||||| targets:1   CUAGUAUUGACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
JB163536.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||=|||||||||||||| targets:1   CUAGUAUUGACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
JB163478.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||=|||||||||||||| targets:1   CUAGUAUUGACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||=|||||||||||||| targets:1   CUAGUAUUGACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||=|||||||||||||| targets:1   CUAGUAUUGACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008650840.2	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=|||||||*|||||| targets:3363   UCUAGUAUUGACCUCAACCCACAU   3386 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA	NA	coding protein	psRNATarget
BT070204.2	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |*|||||||||=|||||||||||| targets:912   UAUAGUAUUAAUCUCAAUCCACAU   935 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0171F04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539168.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||*||||||||||||=| targets:1320   UCUAGUAUUCACCUCAAUCCACGU   1343 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC107275233 (LOC107275233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU950672.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||*||||||||||||=| targets:1023   UCUAGUAUUCACCUCAAUCCACGU   1046 Target Full Sequence	2.5	Zea mays clone 508256 mRNA sequence	NA	coding protein	psRNATarget
LQ239375.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=||||||||||||*| targets:15   UCUAGUAUUGACCUCAAUCCACUU   38 Target Full Sequence	2.5	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
JB167706.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=||||||||||||*| targets:15   UCUAGUAUUGACCUCAAUCCACUU   38 Target Full Sequence	2.5	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
HI407245.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   |||||||||=||||||||||||*| targets:15   UCUAGUAUUGACCUCAAUCCACUU   38 Target Full Sequence	2.5	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||||=|||||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||||=|||||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||||=|||||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||||=|||||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||||=|||||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||||=|||||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCACAU   24 Target Full Sequence	1.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
JB163457.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||*|||||||||||||| targets:1   CUAGUAUUCACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
HI402996.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||*|||||||||||||| targets:1   CUAGUAUUCACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||||||*|||||||||||||| targets:1   CUAGUAUUCACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||*|||=|||||||||||||| targets:1   CUAGCAUUGACCUCAAUCCACAU   23 Target Full Sequence	2.0	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
HI402950.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||*|||=|||||||||||||| targets:1   CUAGCAUUGACCUCAAUCCACAU   23 Target Full Sequence	2.0	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
JB163411.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||*|||=|||||||||||||| targets:1   CUAGCAUUGACCUCAAUCCACAU   23 Target Full Sequence	2.0	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008659899.2	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   ||*||||||=|||||||||*|||| targets:2061   UCAAGUAUUGACCUCAAUCAACAU   2084 Target Full Sequence	2.5	PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA	NA	coding protein	psRNATarget
JB163599.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||*|||||*|||||||||||||| targets:1   CUCGUAUUCACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1263 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235268.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||*|||||*|||||||||||||| targets:1   CUCGUAUUCACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1263 from Patent EP2985353	NA	coding protein	psRNATarget
HI403138.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||*|||||*|||||||||||||| targets:1   CUCGUAUUCACCUCAAUCCACAU   23 Target Full Sequence	1.0	Sequence 1263 from Patent EP2074227	NA	coding protein	psRNATarget
BT067709.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   *|*||||||*|||||||||||=|| targets:1769   ACGAGUAUUCACCUCAAUCCAUAU   1792 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0125K08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149644.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   *|*||||||*|||||||||||=|| targets:1769   ACGAGUAUUCACCUCAAUCCAUAU   1792 Target Full Sequence	2.5	Zea mays RNA methyltransferase family protein (cl27616_1), mRNA	NA	coding protein	psRNATarget
EU957013.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   *|*||||||*|||||||||||=|| targets:1783   ACGAGUAUUCACCUCAAUCCAUAU   1806 Target Full Sequence	2.5	Zea mays clone 1580497 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT042729.1	ncRNA:24   AGAUCAUAAUUGGAGUUAGGUGUA   1   *|*||||||*|||||||||||=|| targets:1699   ACGAGUAUUCACCUCAAUCCAUAU   1722 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0030P17 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||*=|||||||||||||| targets:1   CUAGCAUAGACCUCAAUCCACAU   23 Target Full Sequence	3.0	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget
JB163398.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||*=|||||||||||||| targets:1   CUAGCAUAGACCUCAAUCCACAU   23 Target Full Sequence	3.0	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget
HI402937.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||||*||*=|||||||||||||| targets:1   CUAGCAUAGACCUCAAUCCACAU   23 Target Full Sequence	3.0	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
JB167413.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||*|||||*|=|||||||||||| targets:1   CUUGUAUUCAUCUCAAUCCACAU   23 Target Full Sequence	2.5	Sequence 5077 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239082.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||*|||||*|=|||||||||||| targets:1   CUUGUAUUCAUCUCAAUCCACAU   23 Target Full Sequence	2.5	Sequence 5077 from Patent EP2985353	NA	coding protein	psRNATarget
HI406952.1	ncRNA:23   GAUCAUAAUUGGAGUUAGGUGUA   1   ||*|||||*|=|||||||||||| targets:1   CUUGUAUUCAUCUCAAUCCACAU   23 Target Full Sequence	2.5	Sequence 5077 from Patent EP2074227	NA	coding protein	psRNATarget