Search result

BaseInfo

ncRNA ID novel_zma_miR2896
Species Zea mays
Class miRNA
Genome position Chr3:161413108-161413189 [+]
Reference genome RefGen_v4
Source SRR2089714
Length 24
Mature sequence(if miRNA) 1 - UGGAUUUGUGUGUAUUGGGAUGGA - 24
Stem-loop(if miRNA) --      -U   U    UGGGA         A       -   C
  UGGAUU  GUG GUAU     UGGAUUGGA UAGAUUU UGA U
  ||||||  ||| ||||     ||||||||| ||||||| |||
  ACCUAA  CAC CAUA     ACUUAGCCU AUUUAGG AUU U
AC      CU   -    -----         A       U   G
Stem-loop sequence UGGAUUUGUGUGUAUUGGGAUGGAUUGGAAUAGAUUUUGACUUGUUAUGGAUUUAAUCCGAUUCAAUACCACUCAAUCCACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ110342.1
ncRNA:24   AGGUAGGGUUAUGUGUGUUUAGGU   1
  |=||*=|||||||||||*||||||
targets:6   UUCACUCCAAUACACACCAAUCCA   29

2.5 TSA: Zea mays contig46002, mRNA sequence NA coding protein psRNATarget