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BaseInfo

ncRNA ID	novel_zma_miR2892
Species	Zea mays
Class	miRNA
Genome position	Chr3:134418017-134418149 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2287031;SRR2287159;SRR2287162;SRR2287163;SRR5451005;SRR5451006;SRR2089706
Length	24
Mature sequence(if miRNA)	1 - AAGGGCUGUUUGGUUUGUGGCUAA - 24
Stem-loop(if miRNA)	--AA   -            -  G    AUG              -------------          CG   G     GGG CUGUUUGGUUUG UG CUAA   UGCCACACUUUGCC             UAAGGUUAGU  UUC A     ||| |||||||||||| || ||||   ||||||||||||||             ||||||||||  ||| A     CCC GACAAACCAAAC AC GAUU   ACGGUGUGAAACGG             AUUCCAAUCA  AAG U GAUC   A            U  G    -GA              UUUGAAAAGAUGA          AG   U
Stem-loop sequence	AAGGGCUGUUUGGUUUGUGGCUAAAUGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAAGUAGAAAAGUUUGGCAAAGUGUGGCAAGUUAGGCAUCAAACCAAACAGACCCCUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545710.1	ncRNA:24   AAUCGGUGUUUGGUUUGU-CGGGAA   1   ||||||||||||||||||-|||||| targets:2662   UUAGCCACAAACCAAACAAGCCCUU   2686 Target Full Sequence	3.0	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   |||||||||||||||||||*|||| targets:943   UUAGCCACAAACCAAACAGGCCUU   966 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   |||||||||||||||||||*|||| targets:1427   UUAGCCACAAACCAAACAGGCCUU   1450 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
JB163745.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||||||=||||||||||*|||| targets:104   UUAGCCACGAACCAAACAGACCUU   127 Target Full Sequence	2.5	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||||||=||||||||||*|||| targets:104   UUAGCCACGAACCAAACAGACCUU   127 Target Full Sequence	2.5	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
HI403284.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||||||=||||||||||*|||| targets:104   UUAGCCACGAACCAAACAGACCUU   127 Target Full Sequence	2.5	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||||||=||||||||||*|||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	2.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||||||=||||||||||*|||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	2.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||||||=||||||||||*|||| targets:107   UUAGCCACGAACCAAACAGGCCUU   130 Target Full Sequence	2.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
EZ110937.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||||||=|||||||||||||*| targets:140   UUAGCCACGAACCAAACAGCCCCU   163 Target Full Sequence	2.5	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   |||||=||||||||||||||||*| targets:1019   UUAGCUACAAACCAAACAGCCCCU   1042 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   |||||=||||||||||||||||*| targets:1507   UUAGCUACAAACCAAACAGCCCCU   1530 Target Full Sequence	2.5	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   |||||=||||||||||||||||*| targets:1517   UUAGCUACAAACCAAACAGCCCCU   1540 Target Full Sequence	2.5	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AAUCGGUGUUUGGUUUGUC-GGGAA   1   |||*|||||||||||||||-||||| targets:215   UUAACCACAAACCAAACAGGCCCUU   239 Target Full Sequence	3.0	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AAUCGGUGUUUGGUUUGUC-GGGAA   1   |||*|||||||||||||||-||||| targets:215   UUAACCACAAACCAAACAGGCCCUU   239 Target Full Sequence	3.0	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||||||*|||||||||||||*| targets:1572   UUAGCCACCAACCAAACAGCCCCU   1595 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
AY104775.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||*|*||||||||||||||||* targets:649   UUAGGCUCAAACCAAACAGCCCUA   672 Target Full Sequence	2.0	Zea mays PCO061308 mRNA sequence	NA	coding protein	psRNATarget
XM_008649194.2	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||*|*||||||||||||||||* targets:1115   UUAGGCUCAAACCAAACAGCCCUA   1138 Target Full Sequence	2.0	PREDICTED: Zea mays D-aminoacyl-tRNA deacylase (AY104775), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035068.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||*|*||||||||||||||||* targets:1255   UUAGGCUCAAACCAAACAGCCCUA   1278 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0035J23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138873.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||*|*||||||||||||||||* targets:1256   UUAGGCUCAAACCAAACAGCCCUA   1279 Target Full Sequence	2.0	Zea mays D-aminoacyl-tRNA deacylase (AY104775), mRNA	NA	coding protein	psRNATarget
BT036147.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCGGGAA   1   ||||*|*||||||||||||||||* targets:1256   UUAGGCUCAAACCAAACAGCCCUA   1279 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0098I08 mRNA, complete cds	NA	coding protein	psRNATarget
EZ109363.1	ncRNA:24   AAUC-------GGUGUUUGGUUUGUCGGGAA   1   *|||-------|||||=|||||||||||*|| targets:47   AUAGGUUGACUCCACAGACCAAACAGCCAUU   77 Target Full Sequence	2.5	TSA: Zea mays contig45022, mRNA sequence	NA	coding protein	psRNATarget