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BaseInfo

ncRNA ID	osa-miR1437b-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:3955862-3956129 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	197 - GGGAGGAAACAGUGCCUAGUG - 217
Stem-loop(if miRNA)	A     C                  A   A                                    A  -     ----  C         --  A    C  CAA CGGAGGAAGGAGGCCGGCGCACAGAGGACGAG GGUGA GGCGCGUGGGGAGGGAGG AAC GUGCCUAGUGCGGCGCCGGAGCUCGCCAGCACGCGG AG GAGGU    AG GGCGGUGGC  GG GCGC GG   G |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||    || |||||||||  || |||| || GCCUCCUUCCUCCGGCCGCGUGUCUCCUGCUC CCACU CCGCGCGCCCCUCCCUCC UUG CACGGAUCACGCCGUGGCCUCGAGCGGUCGUGCGUC UC CUCCA    UC CUGCCGCCG  CC CGCG CC   C                                 G     A                  C   C                                    C  A     CUCC  -         GU  -    -  UCU
Stem-loop sequence	CGGAGGAAGGAGGCCGGCGCACAGAGGACGAGAGGUGACGGCGCGUGGGGAGGGAGGAAACAGUGCCUAGUGCGGCGCCGGAGCUCGCCAGCACGCGGAAGGAGGUAGCGGCGGUGGCGGAGCGCCGGCAAGCUCUCCGCGCCCUGGCCGCCGUCCUCCUCACCUCACUCCUGCGUGCUGGCGAGCUCCGGUGCCGCACUAGGCACCGUUCCCUCCCUCCCCGCGCGCCAUCACCGCUCGUCCUCUGUGCGCCGGCCUCCUUCCUCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015761462.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:739   CACAAGGCACUGUUUACUCCC   759 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X5, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
XM_015761460.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:865   CACAAGGCACUGUUUACUCCC   885 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X3, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
XM_015761461.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1399   CACAAGGCACUGUUUACUCCC   1419 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X4, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
AK071696.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1789   CACAAGGCACUGUUUACUCCC   1809 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023109P16, full insert sequence	NA	coding protein	psRNATarget
XM_015761468.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1799   CACAAGGCACUGUUUACUCCC   1819 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X10, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
XM_015761465.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1772   CACAAGGCACUGUUUACUCCC   1792 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X8, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
XM_015761464.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1799   CACAAGGCACUGUUUACUCCC   1819 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X7, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
XM_015761459.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1815   CACAAGGCACUGUUUACUCCC   1835 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X2, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
XM_015761463.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1799   CACAAGGCACUGUUUACUCCC   1819 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X6, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
XM_015761458.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1799   CACAAGGCACUGUUUACUCCC   1819 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X1, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget
AK073048.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1746   CACAAGGCACUGUUUACUCCC   1766 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033007C03, full insert sequence	NA	coding protein	psRNATarget
XM_015761467.1	ncRNA:21   GUGAUCCGUGACAAAGGAGGG   1   |||*|||||||||||*||||| targets:1799   CACAAGGCACUGUUUACUCCC   1819 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tropinone reductase 1 (LOC4350414), transcript variant X9, mRNA	tropinone reductase 1(LOC4350414)	coding protein	psRNATarget

Reference

1

PMID:23627500 "Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance"; Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B; New Phytol. 199:212-227(2013).