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BaseInfo

ncRNA ID	novel_zma_miR2887
Species	Zea mays
Class	miRNA
Genome position	Chr10:76932726-76932944 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - UUGCACAGAAGGAUUGCUUGCACA - 24
Stem-loop(if miRNA)	--          A                                                            C  AUUUAACACUUAAACCCUU   CCACUGGCUCAAUAAUCUUUA   UGCAAGCAGU UUUCUGUGCAAGCGUGCAAGCAAACCAUCUGAUCCGUUAGAUCGUGAUCCAACCGUAGGU AC                   CCA                     U   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||                   |||                     A   ACGUUCGUUA GAAGACACGUUCGCACGUUCGUUUGGUAGACUAGGCAAUCUAGCACUAGGUUGGUGUCUA UG                   UUG                     A AC          G                                                            -  -------------------   GUAUCAAACAAUCCCCAAAAA
Stem-loop sequence	UGCAAGCAGUAUUUCUGUGCAAGCGUGCAAGCAAACCAUCUGAUCCGUUAGAUCGUGAUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACCACUGGCUCAAUAAUCUUUAUAAAAAAACCCCUAACAAACUAUGGUUGUAUCUGUGGUUGGAUCACGAUCUAACGGAUCAGAUGGUUUGCUUGCACGCUUGCACAGAAGGAUUGCUUGCACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163400.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   ||||=|||||=||||||||||=|| targets:9   UGUGUAAGCAGUCCUUCUGUGUAA   32 Target Full Sequence	2.5	Sequence 1064 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235069.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   ||||=|||||=||||||||||=|| targets:9   UGUGUAAGCAGUCCUUCUGUGUAA   32 Target Full Sequence	2.5	Sequence 1064 from Patent EP2985353	NA	coding protein	psRNATarget
HI402939.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   ||||=|||||=||||||||||=|| targets:9   UGUGUAAGCAGUCCUUCUGUGUAA   32 Target Full Sequence	2.5	Sequence 1064 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235247.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   ||||=|||||=||||||||||=|| targets:9   UGUGUAAGCAGUCCUUCUGUGUAA   32 Target Full Sequence	2.5	Sequence 1242 from Patent EP2985353	NA	coding protein	psRNATarget
JB163578.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   ||||=|||||=||||||||||=|| targets:9   UGUGUAAGCAGUCCUUCUGUGUAA   32 Target Full Sequence	2.5	Sequence 1242 from Patent EP2559767	NA	coding protein	psRNATarget
HI403117.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   ||||=|||||=||||||||||=|| targets:9   UGUGUAAGCAGUCCUUCUGUGUAA   32 Target Full Sequence	2.5	Sequence 1242 from Patent EP2074227	NA	coding protein	psRNATarget
JB163842.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:1   UAUGCAAGCAGUCCUUCUGUGCAA   24 Target Full Sequence	1.0	Sequence 1506 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235511.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:1   UAUGCAAGCAGUCCUUCUGUGCAA   24 Target Full Sequence	1.0	Sequence 1506 from Patent EP2985353	NA	coding protein	psRNATarget
HI403381.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:1   UAUGCAAGCAGUCCUUCUGUGCAA   24 Target Full Sequence	1.0	Sequence 1506 from Patent EP2074227	NA	coding protein	psRNATarget
JB163856.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:1   UAUGCAAGCAGUCCUUCUGUGCAA   24 Target Full Sequence	1.0	Sequence 1520 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235525.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:1   UAUGCAAGCAGUCCUUCUGUGCAA   24 Target Full Sequence	1.0	Sequence 1520 from Patent EP2985353	NA	coding protein	psRNATarget
HI403395.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:1   UAUGCAAGCAGUCCUUCUGUGCAA   24 Target Full Sequence	1.0	Sequence 1520 from Patent EP2074227	NA	coding protein	psRNATarget
JB163648.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1312 from Patent EP2559767	NA	coding protein	psRNATarget
HI403187.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1312 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235317.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1312 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235277.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1272 from Patent EP2985353	NA	coding protein	psRNATarget
HI403147.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1272 from Patent EP2074227	NA	coding protein	psRNATarget
JB163608.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1272 from Patent EP2559767	NA	coding protein	psRNATarget
HI409052.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 7177 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241182.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 7177 from Patent EP2985353	NA	coding protein	psRNATarget
JB169513.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:9   UAUGCAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 7177 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008680394.2	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:95   UAUGCAAGCAGUCCUUCUGUGCAA   118 Target Full Sequence	1.0	PREDICTED: Zea mays mini zinc finger protein 4 (LOC103653502), mRNA	NA	coding protein	psRNATarget
BT066599.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:643   UAUGCAAGCAGUCCUUCUGUGCAA   666 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0034B07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151629.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:2034   UAUGCAAGCAGUCCUUCUGUGCAA   2057 Target Full Sequence	1.0	Zea mays uncharacterized LOC100278316 (si946092e03), mRNA	NA	coding protein	psRNATarget
EU972964.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||||||||=||||||||||||| targets:2034   UAUGCAAGCAGUCCUUCUGUGCAA   2057 Target Full Sequence	1.0	Zea mays clone 390894 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB163464.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=|||||=||||||||||||| targets:9   UAUGUAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1128 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235133.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=|||||=||||||||||||| targets:9   UAUGUAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1128 from Patent EP2985353	NA	coding protein	psRNATarget
HI403003.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=|||||=||||||||||||| targets:9   UAUGUAAGCAGUCCUUCUGUGCAA   32 Target Full Sequence	1.0	Sequence 1128 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008664646.2	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|||||*|||||||||||||||| targets:204   UAUGCAAACAAUCCUUCUGUGCAA   227 Target Full Sequence	1.0	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008664645.2	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|||||*|||||||||||||||| targets:204   UAUGCAAACAAUCCUUCUGUGCAA   227 Target Full Sequence	1.0	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008664644.2	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|||||*|||||||||||||||| targets:204   UAUGCAAACAAUCCUUCUGUGCAA   227 Target Full Sequence	1.0	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403344.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|||||*||=||||||||||||| targets:1   UAUGCAACCAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1469 from Patent EP2074227	NA	coding protein	psRNATarget
JB163805.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|||||*||=||||||||||||| targets:1   UAUGCAACCAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1469 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235474.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|||||*||=||||||||||||| targets:1   UAUGCAACCAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1469 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235229.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=||||||||*|||||||||| targets:9   UAUGUAAGCAAUCAUUCUGUGCAA   32 Target Full Sequence	1.5	Sequence 1224 from Patent EP2985353	NA	coding protein	psRNATarget
JB163560.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=||||||||*|||||||||| targets:9   UAUGUAAGCAAUCAUUCUGUGCAA   32 Target Full Sequence	1.5	Sequence 1224 from Patent EP2559767	NA	coding protein	psRNATarget
HI403099.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=||||||||*|||||||||| targets:9   UAUGUAAGCAAUCAUUCUGUGCAA   32 Target Full Sequence	1.5	Sequence 1224 from Patent EP2074227	NA	coding protein	psRNATarget
HI403317.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=||*||=||||||||||||| targets:1   UAUGUAAACAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1442 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235447.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=||*||=||||||||||||| targets:1   UAUGUAAACAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1442 from Patent EP2985353	NA	coding protein	psRNATarget
JB163778.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=||*||=||||||||||||| targets:1   UAUGUAAACAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1442 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235063.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=|||||=|||||||||*||| targets:9   UAUGUAAGCAGUCCUUCUGUACAA   32 Target Full Sequence	2.5	Sequence 1058 from Patent EP2985353	NA	coding protein	psRNATarget
HI402933.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=|||||=|||||||||*||| targets:9   UAUGUAAGCAGUCCUUCUGUACAA   32 Target Full Sequence	2.5	Sequence 1058 from Patent EP2074227	NA	coding protein	psRNATarget
JB163394.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*||=|||||=|||||||||*||| targets:9   UAUGUAAGCAGUCCUUCUGUACAA   32 Target Full Sequence	2.5	Sequence 1058 from Patent EP2559767	NA	coding protein	psRNATarget
HI403273.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|*|||*||=||||||||||||| targets:1   UAUACAAACAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1398 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235403.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|*|||*||=||||||||||||| targets:1   UAUACAAACAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1398 from Patent EP2985353	NA	coding protein	psRNATarget
JB163734.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|*|||*||=||||||||||||| targets:1   UAUACAAACAGUCCUUCUGUGCAA   24 Target Full Sequence	2.0	Sequence 1398 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020548736.1	ncRNA:24   ACACGUUCGUUAGGAAGACACGUU   1   |*|*||||||=|*||||||||||| targets:1654   UAUACAAGCAGUGCUUCUGUGCAA   1677 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA	NA	coding protein	psRNATarget