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BaseInfo

ncRNA ID	novel_zma_miR2886
Species	Zea mays
Class	miRNA
Genome position	Chr2:959119-959204 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	63 - GGAGGGGAUUGGAGGGGAUAAAAU - 86
Stem-loop(if miRNA)	--    GG      A    A    A   A         A  UA   GGAG  GAUUGG GGGG UAAA UUC CUUCUUAUU AA  A   ||||  |||||| |||| |||| ||| ||||||||| ||   UCUC  UUAAUC CCCC AUUU AAG GAAGAAUAA UU  A GG    UU      G    G    A   A         G  UU
Stem-loop sequence	GGAGGGGAUUGGAGGGGAUAAAAUUCACUUCUUAUUAAAUAAAUUUUGAAUAAGAAGAGAAAUUUAGCCCCGCUAAUUUUCUCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065170.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||||||||||||||||||||||| targets:680   AUUUUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||||||||||||||||||||||| targets:1560   AUUUUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||||||||||||||||||||||| targets:1580   AUUUUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||||||||||||||||||||||| targets:1604   AUUUUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||||||||||||||||||||||| targets:1637   AUUUUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*||||||||||||||||| targets:3496   AUUUUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*||||||||||||||||| targets:3531   AUUUUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*||||||||||=|||||| targets:70   AUUUUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
JB163850.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*||||||||||=|||||| targets:70   AUUUUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
HI403389.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*||||||||||=|||||| targets:70   AUUUUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
JB166281.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*||||||=|||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*||||||=|||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*||||||=|||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||||*|||||=||||||||||| targets:1109   AUUUUAGCCCCUUCAAUCCCCUCC   1132 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||*|||=|||||||||||||=| targets:85   AUUUAAUCUCCUCCAAUCCCCUUC   108 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||*|||=|||||||||||||=| targets:85   AUUUAAUCUCCUCCAAUCCCCUUC   108 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||*|||=|||||||||||||=| targets:85   AUUUAAUCUCCUCCAAUCCCCUUC   108 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||*|||=|||||||||||||=| targets:85   AUUUAAUCUCCUCCAAUCCCCUUC   108 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||*|||=|||||||||||||=| targets:85   AUUUAAUCUCCUCCAAUCCCCUUC   108 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||*|||=|||||||||||||=| targets:85   AUUUAAUCUCCUCCAAUCCCCUUC   108 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
BT017268.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||*|||||||||||||||||== targets:907   AUUUCAUCCCCUCCAAUCCCCUUU   930 Target Full Sequence	2.5	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |*||||*||||||||||||||||| targets:1027   ACUUUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	1.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
BT017648.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ||||*|*||=|||||||||||||| targets:163   AUUUAAGCCUCUCCAAUCCCCUCC   186 Target Full Sequence	2.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
LQ238072.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||*|||*|||||||||||*|||| targets:81   AUUAUAUGCCCUCCAAUCCACUCC   104 Target Full Sequence	2.5	Sequence 4067 from Patent EP2985353	NA	coding protein	psRNATarget
HI405942.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||*|||*|||||||||||*|||| targets:81   AUUAUAUGCCCUCCAAUCCACUCC   104 Target Full Sequence	2.5	Sequence 4067 from Patent EP2074227	NA	coding protein	psRNATarget
JB166403.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||*|||*|||||||||||*|||| targets:81   AUUAUAUGCCCUCCAAUCCACUCC   104 Target Full Sequence	2.5	Sequence 4067 from Patent EP2559767	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   **||*||||||||||||||=|||* targets:81   CCUUAAUCCCCUCCAAUCCUCUCG   104 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   |||*||*||||||||||||*|||| targets:214   AUUCUAGCCCCUCCAAUCCACUCC   237 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   UAAAAUAGGGGAGGUUAGGGGAGG   1   ***|||*||||||||||||||||= targets:328   UGCUUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget