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BaseInfo

ncRNA ID novel_zma_miR2885
Species Zea mays
Class miRNA
Genome position Chr2:2555482-2555617 [-]
Reference genome RefGen_v4
Source SRR2089714
Length 24
Mature sequence(if miRNA) 1 - AGCAACUAGAGACGUUAGAUCUGA - 24
Stem-loop(if miRNA) --AA       A             GU        A    U    C U  AACCACAACACUUCACCA
    AUCUAAC UCUCUGGUUGCUU  UAUAUUUU CAAA AACA C UC                  C
    ||||||| |||||||||||||  |||||||| |||| |||| | ||
    UAGAUUG AGAGAUCAACGAG  AUAUAAAA GUUU UUGU G AG                  U
AGUC       C             AC        C    C    A U  ACUUAAGACUUCACCACU
Stem-loop sequence AAAUCUAACAUCUCUGGUUGCUUGUUAUAUUUUACAAAUAACACCUUCAACCACAACACUUCACCACUUCACCACUUCAGAAUUCAGAUGAUGUUCUUUGCAAAAUAUACAGAGCAACUAGAGACGUUAGAUCUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235354.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||||||||||||||||||=|
targets:23   UUAGAUCUAACGUCUCUAGUUGUU   46

1.5 Sequence 1349 from Patent EP2985353 NA coding protein psRNATarget
HI403224.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||||||||||||||||||=|
targets:23   UUAGAUCUAACGUCUCUAGUUGUU   46

1.5 Sequence 1349 from Patent EP2074227 NA coding protein psRNATarget
JB163685.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||||||||||||||||||=|
targets:23   UUAGAUCUAACGUCUCUAGUUGUU   46

1.5 Sequence 1349 from Patent EP2559767 NA coding protein psRNATarget
BT087210.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||||||||||||||||||=|
targets:349   UUAGAUCUAACGUCUCUAGUUGUU   372

1.5 Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds NA coding protein psRNATarget
HI402998.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||=|||||||||||||||=|
targets:75   UUAGAUUUAACGUCUCUAGUUGUU   98

2.5 Sequence 1123 from Patent EP2074227 NA coding protein psRNATarget
LQ235128.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||=|||||||||||||||=|
targets:75   UUAGAUUUAACGUCUCUAGUUGUU   98

2.5 Sequence 1123 from Patent EP2985353 NA coding protein psRNATarget
JB163459.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||=|||||||||||||||=|
targets:75   UUAGAUUUAACGUCUCUAGUUGUU   98

2.5 Sequence 1123 from Patent EP2559767 NA coding protein psRNATarget
JB166451.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||=|||||||||||||||*|
targets:41   UUAGAUUUAACGUCUCUAGUUGAU   64

2.5 Sequence 4115 from Patent EP2559767 NA coding protein psRNATarget
LQ238120.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||=|||||||||||||||*|
targets:41   UUAGAUUUAACGUCUCUAGUUGAU   64

2.5 Sequence 4115 from Patent EP2985353 NA coding protein psRNATarget
HI405990.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||=|||||||||||||||*|
targets:41   UUAGAUUUAACGUCUCUAGUUGAU   64

2.5 Sequence 4115 from Patent EP2074227 NA coding protein psRNATarget
JB163845.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||||||=|||||||||||*|
targets:23   UUAGAUCUAAUGUCUCUAGUUGAU   46

2.5 Sequence 1509 from Patent EP2559767 NA coding protein psRNATarget
HI403384.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||||||=|||||||||||*|
targets:23   UUAGAUCUAAUGUCUCUAGUUGAU   46

2.5 Sequence 1509 from Patent EP2074227 NA coding protein psRNATarget
LQ235514.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||||||=|||||||||||*|
targets:23   UUAGAUCUAAUGUCUCUAGUUGAU   46

2.5 Sequence 1509 from Patent EP2985353 NA coding protein psRNATarget
BT061436.2
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  |=||||=|||||||||||||||*|
targets:183   UUAGAUUUAACGUCUCUAGUUGAU   206

2.5 Zea mays full-length cDNA clone ZM_BFb0145O04 mRNA, complete cds NA coding protein psRNATarget
XM_020545650.1
ncRNA:24   AGUCUAGAUUGCAGAGAUCAACGA   1
  *|||-|||||*|||||*|||||||
targets:3027   GCAG-UCUAAAGUCUCAAGUUGCU   3049

2.5 PREDICTED: Zea mays enolase-phosphatase E1 (LOC103641817), mRNA NA coding protein psRNATarget
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