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BaseInfo

ncRNA ID	osa-miR2275d
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:3736806-3736932 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	21 - CUUGUUUUUCUCCAAUAUCUCA - 42
Stem-loop(if miRNA)	UUGU       ------     A      -               ACUGAUU     UU         A       UCAGGCA      CUGGA GUGAGA AUUGGAGGAAAACAA       GCUGG  GUUGUUUGC ACA     |||||||      ||||| |||||| |||||||||||||||       |||||  ||||||||| ||G     AGUUCGU      GACUU CACUCU UAACCUCUUUUUGUU       CGACU  UAACAAACG UGU ----       UAGUUG     C      A               -------     UG         G
Stem-loop sequence	UUGUUCAGGCACUGGAAGUGAGAAUUGGAGGAAAACAAACUGAUUGCUGGUUGUUGUUUGCAACAGUGUGGCAAACAAUGUUCAGCUUGUUUUUCUCCAAUAUCUCACCUUCAGGUUGAUUGCUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT834374.1	ncRNA:22   AC---UCUAUAACCUCUUUUUGUUC   1   ||---|||||||||||||*|||||* targets:421   UGGGAAGAUAUUGGAGAACAACAAA   445 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA047N03, full insert sequence	NA	coding protein	psRNATarget
AK099511.1	ncRNA:22   AC---UCUAUAACCUCUUUUUGUUC   1   ||---|||||||||||||*|||||* targets:448   UGGGAAGAUAUUGGAGAACAACAAA   472 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013029F19, full insert sequence	NA	coding protein	psRNATarget
XM_015774951.1	ncRNA:22   AC---UCUAUAACCUCUUUUUGUUC   1   ||---|||||||||||||*|||||* targets:451   UGGGAAGAUAUUGGAGAACAACAAA   475 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group membrane-anchored ubiquitin-fold protein 1 (LOC4333160), transcript variant X2, mRNA	membrane-anchored ubiquitin-fold protein 1(LOC4333160)	coding protein	psRNATarget
XM_015774949.1	ncRNA:22   AC---UCUAUAACCUCUUUUUGUUC   1   ||---|||||||||||||*|||||* targets:455   UGGGAAGAUAUUGGAGAACAACAAA   479 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group membrane-anchored ubiquitin-fold protein 1 (LOC4333160), transcript variant X1, mRNA	membrane-anchored ubiquitin-fold protein 1(LOC4333160)	coding protein	psRNATarget
AK062042.1	ncRNA:22   AC---UCUAUAACCUCUUUUUGUUC   1   ||---||||*||||||||*|||||| targets:647   UGCCAAGAUCUUGGAGAACAACAAG   671 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-044-A05, full insert sequence	NA	coding protein	psRNATarget
AK066230.1	ncRNA:22   AC---UCUAUAACCUCUUUUUGUUC   1   ||---||||*||||||||*|||||| targets:1490   UGCCAAGAUCUUGGAGAACAACAAG   1514 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013057K01, full insert sequence	NA	coding protein	psRNATarget
AK065529.1	ncRNA:22   AC---UCUAUAACCUCUUUUUGUUC   1   ||---||||*||||||||*|||||| targets:1501   UGCCAAGAUCUUGGAGAACAACAAG   1525 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013031D19, full insert sequence	NA	coding protein	psRNATarget
AK099780.1	ncRNA:22   AC---UCUAUAACCUCUUUUUGUUC   1   ||---||||*||||||||*|||||| targets:2974   UGCCAAGAUCUUGGAGAACAACAAG   2998 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095K10, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).
2	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).