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BaseInfo

ncRNA ID	novel_zma_miR2878
Species	Zea mays
Class	miRNA
Genome position	Chr2:79796902-79796987 [-]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2287159;SRR2287160;SRR2287161;SRR1618882;SRR2287164;SRR1618883;SRR1743455;SRR1745812;SRR3341856;SRR3341905;SRR3385660;SRR4237220;SRR1997865;SRR4237221;SRR4237222;SRR4237224;SRR4237225;SRR4237226;SRR4237227;SRR5100255;SRR5105963;SRR5451005;SRR2089698;SRR2089699;SRR2089703;SRR2089708
Length	22
Mature sequence(if miRNA)	65 - AUUGGAGGGGAUUGAGGAGGCU - 86
Stem-loop(if miRNA)	--                          A   AG     UUAG   AUUGGAGGGGAUUGAGGAGGCUAAAA UCC  GGAUU    C   |||||||||||||||||||||||||| |||  |||||    C   UAACCUCCCCUAACUCCUCCGAUUUU AGG  CCUAA    U CU                          -   GA     CUCC
Stem-loop sequence	AUUGGAGGGGAUUGAGGAGGCUAAAAAUCCAGGGAUUUUAGCCUCCUCAAUCCAGGGAUUUUAGCCUCCUCAAUCCCCUCCAAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163816.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   |*=||||||||||||||||||| targets:29   AUUCUCCUCAAUCCCCUCCAAU   50 Target Full Sequence	0.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   |*=||||||||||||||||||| targets:29   AUUCUCCUCAAUCCCCUCCAAU   50 Target Full Sequence	0.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   |*=||||||||||||||||||| targets:29   AUUCUCCUCAAUCCCCUCCAAU   50 Target Full Sequence	0.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   ||||*|||||||||||||||=| targets:9   AGCCCCCUCAAUCCCCUCCAGU   30 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
JB163479.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **|||=|||||||||||||=|| targets:53   UUCCUUCUCAAUCCCCUCCGAU   74 Target Full Sequence	2.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
HI403018.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **|||=|||||||||||||=|| targets:53   UUCCUUCUCAAUCCCCUCCGAU   74 Target Full Sequence	2.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **|||=|||||||||||||=|| targets:53   UUCCUUCUCAAUCCCCUCCGAU   74 Target Full Sequence	2.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   |*||*||||||||||||||||| targets:31   AUCCCCCUCAAUCCCCUCCAAU   52 Target Full Sequence	1.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   |*||*||||||||||||||||| targets:31   AUCCCCCUCAAUCCCCUCCAAU   52 Target Full Sequence	1.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   |*||*||||||||||||||||| targets:31   AUCCCCCUCAAUCCCCUCCAAU   52 Target Full Sequence	1.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:22   UCGGAG-GAGUUAGGGGAGGUUA   1   **=|||-|||||||||||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAU   90 Target Full Sequence	2.0	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:22   UCGGAG-GAGUUAGGGGAGGUUA   1   **=|||-|||||||||||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAU   90 Target Full Sequence	2.0	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
JB163751.1	ncRNA:22   UCGGAG-GAGUUAGGGGAGGUUA   1   **=|||-|||||||||||||||| targets:68   UUUCUCACUCAAUCCCCUCCAAU   90 Target Full Sequence	2.0	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
BT088155.1	ncRNA:22   UCGGAG-GAGUUAGGGGAGGUUA   1   **=|||-|||||||||||||||| targets:1461   UUUCUCUCUCAAUCCCCUCCAAU   1483 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
EU941872.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **||*|||||||||=||||||| targets:94   UUCCACCUCAAUCCUCUCCAAU   115 Target Full Sequence	2.5	Zea mays clone 1471472 mRNA sequence	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   |*||*||||||||||||||=|| targets:3174   AUCCCCCUCAAUCCCCUCCGAU   3195 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **||*|||||||||||||=||| targets:1797   UUCCCCCUCAAUCCCCUCUAAU   1818 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **||*||||||||||||||=|| targets:2149   UUCCCCCUCAAUCCCCUCCGAU   2170 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **||*|||||||||=||||||| targets:2428   UUCCACCUCAAUCCUCUCCAAU   2449 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_020547122.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **||*|||=||||||||||||| targets:290   UUCCACCUUAAUCCCCUCCAAU   311 Target Full Sequence	2.0	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547119.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **||*|||=||||||||||||| targets:398   UUCCACCUUAAUCCCCUCCAAU   419 Target Full Sequence	2.0	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547387.1	ncRNA:22   UC-GGAGGAGUUAGGGGAGGUUA   1   ||-=|||||*|||=||||||||| targets:2361   AGAUCUCCUAAAUUCCCUCCAAU   2383 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (LOC100193086), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU966099.1	ncRNA:22   UCGGAGGAGUUAGGGGAGGUUA   1   **==||||||||||||||||*| targets:636   CUUUUCCUCAAUCCCCUCCACU   657 Target Full Sequence	2.5	Zea mays clone 291725 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget