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BaseInfo

ncRNA ID novel_zma_miR2875
Species Zea mays
Class miRNA
Genome position Chr2:147515302-147515374 [-]
Reference genome RefGen_v4
Source SRR2089713;SRR2287031;SRR2287162;SRR2089698;SRR2089703
Length 24
Mature sequence(if miRNA) 50 - GGGCUCCUGUACCAGGUCGCGGAC - 73
Stem-loop(if miRNA) --  -    -   UAC    U       C    --   C
  GG GCUC CUG   CAGG CGCGGAC GUCC  GGC C
  || |||| |||   |||| ||||||| ||||  ||| U
  CC CGAG GAC   GUUC GUGCCUG CAGG  CCG G
UU  A    A   -CA    -       C    CG   U
Stem-loop sequence GGGCUCCUGUACCAGGUCGCGGACCGUCCGGCCCUGUGCCGCGGACCGUCCGUGCUUGACCAGAGAGCACCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008666064.2
ncRNA:24   CAGGCGCUGGACCAUGUCCUCGGG   1
  ***||||||*||||||=|||||||
targets:222   CGGCGCGACGUGGUACGGGAGCCC   245

2.5 PREDICTED: Zea mays expansin-B5 (LOC103642905), mRNA NA coding protein psRNATarget
NM_001156821.2
ncRNA:24   CAGGCGCUGGACCAUGUCCUCGGG   1
  ***||||||*||||||=|||||||
targets:220   CGGCGCGACGUGGUACGGGAGCCC   243

2.5 Zea mays beta-expansin 2 (LOC100283923), mRNA NA coding protein psRNATarget
EU966422.1
ncRNA:24   CAGGCGCUGGACCAUGUCCUCGGG   1
  ***||||||*||||||=|||||||
targets:220   CGGCGCGACGUGGUACGGGAGCCC   243

2.5 Zea mays clone 294390 beta-expansin 2 precursor, mRNA, complete cds NA coding protein psRNATarget