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BaseInfo

ncRNA ID	novel_zma_miR2870
Species	Zea mays
Class	miRNA
Genome position	Chr6:112280731-112280782 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2647221;SRR2647343;SRR2647386;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	29 - GACUAGGAAGGGAUUUAAUCCCCU - 52
Stem-loop(if miRNA)	--         A   C     U   U   GGGAUUAAA CCC UUUUA UCA U   ||||||||| ||| ||||| |||   CCCUAAUUU GGG AGGAU AGU U UC         A   A     C   A
Stem-loop sequence	GGGAUUAAAACCCCUUUUAUUCAUUUAUGACUAGGAAGGGAUUUAAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008670947.1	ncRNA:24   UCCCCUAAUUUAGGGAAGGAUCAG   1   |||||||||||||||||||||||| targets:604   AGGGGAUUAAAUCCCUUCCUAGUC   627 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103646219 (LOC103646219), mRNA	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   UCCCCUAAUUUAGGGAAGGAUCAG   1   |||||||||||||||||||||*|| targets:1293   AGGGGAUUAAAUCCCUUCCUAUUC   1316 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680078.2	ncRNA:24   UCCCCUAAUUUAGGGAAGGAUCAG   1   ||*||||||||||||||=|||||| targets:3138   AGAGGAUUAAAUCCCUUUCUAGUC   3161 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680080.2	ncRNA:24   UCCCCUAAUUUAGGGAAGGAUCAG   1   ||*||||||||||||||=|||||| targets:2799   AGAGGAUUAAAUCCCUUUCUAGUC   2822 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008680079.2	ncRNA:24   UCCCCUAAUUUAGGGAAGGAUCAG   1   ||*||||||||||||||=|||||| targets:2799   AGAGGAUUAAAUCCCUUUCUAGUC   2822 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor GTE9 (LOC103653114), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT069231.2	ncRNA:24   UCCCCUAAUUUAGGGAAGGAUCAG   1   |||*|||||||||=|||||||||| targets:1009   AGGAGAUUAAAUCUCUUCCUAGUC   1032 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
EU950695.1	ncRNA:24   UCCCCUAAUUUAGGGAAGGAUCAG   1   |*|||||||||||||||||||||= targets:610   AAGGGAUUAAAUCCCUUCCUAGUU   633 Target Full Sequence	1.0	Zea mays clone 509921 mRNA sequence	NA	coding protein	psRNATarget
XM_008656925.2	ncRNA:24   UCCCCUAA-UUUAGGGAAGGAUCAG   1   |*|*||||-|||||||||||||||= targets:78   AAGAGAUUUAAAUCCCUUCCUAGUU   102 Target Full Sequence	3.0	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA	NA	coding protein	psRNATarget