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BaseInfo

ncRNA ID	novel_zma_miR2867
Species	Zea mays
Class	miRNA
Genome position	Chr2:219173566-219173704 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089715
Length	24
Mature sequence(if miRNA)	116 - ACUGUUCGUAGAGUGAAGAUUGAA - 139
Stem-loop(if miRNA)	--      C           A    A   AG      C   A A     CA   A         UAAGA   ACUGUU GUAGAGUGAAG UUGA UAU  GUAUGA GAU G UAAGC  CUG AGAUAGUCU     C   |||||| ||||||||||| |||| |||  |||||| ||| | |||||  ||| |||||||||     C   UGAUAG CAUUUCACUUC AACU AUA  CAUACU UUA C AUUCG  GAU UCUAUCGGA     A UG      U           A    C   CU      C   C C     AC   C         CGUGU
Stem-loop sequence	ACUGUUCGUAGAGUGAAGAUUGAAUAUAGGUAUGACGAUAGAUAAGCCACUGAAGAUAGUCUUAAGACCAUGUGCAGGCUAUCUCUAGCAGCUUACCCAUUCUCAUACUCAUACUCAAACUUCACUUUACUGAUAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001149242.1	ncRNA:24   AAGUUAGAAGUGAGAUGCUUGUCA   1   ||=||*|||||||||||*|||||| targets:1233   UUUAAACUUCACUCUACAAACAGU   1256 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100275042), mRNA	NA	coding protein	psRNATarget
BT067480.1	ncRNA:24   AAGUUAGAAGUGAGAUGCUUGUCA   1   ||=||*|||||||||||*|||||| targets:1233   UUUAAACUUCACUCUACAAACAGU   1256 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0063K12 mRNA, complete cds	NA	coding protein	psRNATarget
BT086175.2	ncRNA:24   AAGUUAGAAGUGAGAUGCUUGUCA   1   ||*||*|||||||||=|||||||| targets:1399   UUAAAACUUCACUCUGCGAACAGU   1422 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0125C17 mRNA, complete cds	NA	coding protein	psRNATarget
JB166947.1	ncRNA:24   AAGUUAGAAGUGAGAUGCUUGUCA   1   *||||*|||||||||||*|||||| targets:127   CUCAAACUUCACUCUACAAACAGU   150 Target Full Sequence	2.5	Sequence 4611 from Patent EP2559767	NA	coding protein	psRNATarget
HI406486.1	ncRNA:24   AAGUUAGAAGUGAGAUGCUUGUCA   1   *||||*|||||||||||*|||||| targets:127   CUCAAACUUCACUCUACAAACAGU   150 Target Full Sequence	2.5	Sequence 4611 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238616.1	ncRNA:24   AAGUUAGAAGUGAGAUGCUUGUCA   1   *||||*|||||||||||*|||||| targets:127   CUCAAACUUCACUCUACAAACAGU   150 Target Full Sequence	2.5	Sequence 4611 from Patent EP2985353	NA	coding protein	psRNATarget
EU966417.1	ncRNA:24   AAGUUAGAAGUGAGAUGCUUGUCA   1   *||||*|||||||||||*|||||| targets:449   CUCAAACUUCACUCUACAAACAGU   472 Target Full Sequence	2.5	Zea mays clone 294325 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ081599.1	ncRNA:24   AAGUUAGAAGUGAGAUGCUUGUCA   1   ||=||*=|*||||||||||||||| targets:146   UUUAAAUUCCACUCUACGAACAGU   169 Target Full Sequence	3.0	TSA: Zea mays contig17240, mRNA sequence	NA	coding protein	psRNATarget