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BaseInfo

ncRNA ID novel_zma_miR2866
Species Zea mays
Class miRNA
Genome position Chr6:10570528-10570581 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 31 - GGACAGUCCGGUGAAGUAUAGCGG - 54
Stem-loop(if miRNA) --A   -   -        A       G
   CUG GCU CACCGGAC GUCUGGU U
   ||| ||| |||||||| |||||||
   GAU UGA GUGGCCUG CAGGCCA A
GGC   A   A        A       C
Stem-loop sequence ACUGGCUCACCGGACAGUCUGGUGUACACCGGACAGUCCGGUGAAGUAUAGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ078322.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:20   CCGCUAUAAUUCACCGGACUGUCC   43

1.0 TSA: Zea mays contig13961, mRNA sequence NA coding protein psRNATarget
XM_020541939.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:1030   CCGCUAUAAUUCACCGGACUGUCC   1053

1.0 PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X2, mRNA NA coding protein psRNATarget
EU970212.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:476   CCGCUAUAAUUCACCGGACUGUCC   499

1.0 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020541938.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:1043   CCGCUAUAAUUCACCGGACUGUCC   1066

1.0 PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X1, mRNA NA coding protein psRNATarget
BT069634.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:590   CCGCUAUAAUUCACCGGACUGUCC   613

1.0 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
NM_001176828.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:590   CCGCUAUAAUUCACCGGACUGUCC   613

1.0 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
EU947420.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:319   CCGCUAUAAUUCACCGGACUGUCC   342

1.0 Zea mays clone 342805 mRNA sequence NA coding protein psRNATarget
BT064671.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:1080   CCGCUAUAAUUCACCGGACUGUCC   1103

1.0 Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds NA coding protein psRNATarget
BT069667.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:1487   CCGCUAUAAUUCACCGGACUGUCC   1510

1.0 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
BT069667.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:1381   CGGCUAUAAUUCACCGGACUGUCC   1404

1.0 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
NM_001176839.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*|||||||||||||||
targets:1487   CCGCUAUAAUUCACCGGACUGUCC   1510

1.0 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
NM_001176839.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:1381   CGGCUAUAAUUCACCGGACUGUCC   1404

1.0 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
BT042818.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |=||||||*|||||||||||||||
targets:604   CUGCUAUAAUUCACCGGACUGUCC   627

1.0 Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds NA coding protein psRNATarget
XM_020542612.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*||||=||||||||||
targets:1234   CCGCUAUAAUUCAUCGGACUGUCC   1257

2.5 PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657658.2
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*||||=||||||||||
targets:1318   CCGCUAUAAUUCAUCGGACUGUCC   1341

2.5 PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650945.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*||||||||||||||=
targets:841   CCGCUAUAAUUCACCGGACUGUCU   864

2.0 PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA NA coding protein psRNATarget
EU952069.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*||||||||||||||=
targets:849   CCGCUAUAAUUCACCGGACUGUCU   872

2.0 Zea mays clone 1155789 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020548733.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*||=||||||||||||
targets:1921   CCGCUAUAAUUUACCGGACUGUCC   1944

2.5 PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109944105), mRNA NA coding protein psRNATarget
BT054293.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*||=||||||||||||
targets:1927   CCGCUAUAAUUUACCGGACUGUCC   1950

2.5 Zea mays full-length cDNA clone ZM_BFb0218B09 mRNA, complete cds NA coding protein psRNATarget
BT060603.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  *|||||||*|||||||||||||||
targets:1181   GCGCUAUAAUUCACCGGACUGUCC   1204

1.0 Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds NA coding protein psRNATarget
EZ092215.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||*|||||*|||||||||||||||
targets:19   CCUCUAUAAUUCACCGGACUGUCC   42

1.0 TSA: Zea mays contig27864, mRNA sequence NA coding protein psRNATarget
EZ091933.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||||||||*||||||*||||||||
targets:64   CCGCUAUAAUUCACCCGACUGUCC   87

2.5 TSA: Zea mays contig27582, mRNA sequence NA coding protein psRNATarget
HI409700.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:59   CAGCUAUAAUUCACCGGACUGUCC   82

1.0 Sequence 7825 from Patent EP2074227 NA coding protein psRNATarget
LQ241830.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:59   CAGCUAUAAUUCACCGGACUGUCC   82

1.0 Sequence 7825 from Patent EP2985353 NA coding protein psRNATarget
JB170161.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:59   CAGCUAUAAUUCACCGGACUGUCC   82

1.0 Sequence 7825 from Patent EP2559767 NA coding protein psRNATarget
EU947920.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:295   CGGCUAUAAUUCACCGGACUGUCC   318

1.0 Zea mays clone 366338 mRNA sequence NA coding protein psRNATarget
EU948808.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:395   CGGCUAUAAUUCACCGGACUGUCC   418

1.0 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
EU948808.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  ||*|||||*|||||||||||||||
targets:501   CCACUAUAAUUCACCGGACUGUCC   524

1.0 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
BT036301.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:804   CGGCUAUAAUUCACCGGACUGUCC   827

1.0 Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds NA coding protein psRNATarget
EU964665.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:870   CGGCUAUAAUUCACCGGACUGUCC   893

1.0 Zea mays clone 280715 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001176974.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:850   CGGCUAUAAUUCACCGGACUGUCC   873

1.0 Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA NA coding protein psRNATarget
BT070124.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||||||||||||
targets:850   CGGCUAUAAUUCACCGGACUGUCC   873

1.0 Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds NA coding protein psRNATarget
EU962912.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  =*||||||*|||||||||||||||
targets:574   UGGCUAUAAUUCACCGGACUGUCC   597

1.0 Zea mays clone 246496 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU960150.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  **||||||*|||||||||||||||
targets:1298   AGGCUAUAAUUCACCGGACUGUCC   1321

1.0 Zea mays clone 222169 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001175099.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  **||||||*|||||||||||||||
targets:1387   AGGCUAUAAUUCACCGGACUGUCC   1410

1.0 Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA NA coding protein psRNATarget
BT064005.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  **||||||*|||||||||||||||
targets:1387   AGGCUAUAAUUCACCGGACUGUCC   1410

1.0 Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds NA coding protein psRNATarget
EU959991.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |||||*||*||||||||||||||=
targets:408   CCGCUUUAAUUCACCGGACUGUCU   431

3.0 Zea mays clone 221041 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008663618.2
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |||||*||*||||||||||||||=
targets:494   CCGCUUUAAUUCACCGGACUGUCU   517

3.0 PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA NA coding protein psRNATarget
BT054327.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||=|||||||||
targets:1231   CGGCUAUAAUUCACUGGACUGUCC   1254

2.5 Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds NA coding protein psRNATarget
NM_001152486.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||||*|||||=|||||||||
targets:1231   CGGCUAUAAUUCACUGGACUGUCC   1254

2.5 Zea mays hypothetical protein (LOC100279484), mRNA NA coding protein psRNATarget
HI410010.1
ncRNA:20   AUAUGAAGUGGCCUGACAGG   1
  ||||*|||||||||||*|||
targets:1   UAUAAUUCACCGGACUAUCC   20

2.5 Sequence 8135 from Patent EP2074227 NA coding protein psRNATarget
JB170471.1
ncRNA:20   AUAUGAAGUGGCCUGACAGG   1
  ||||*|||||||||||*|||
targets:1   UAUAAUUCACCGGACUAUCC   20

2.5 Sequence 8135 from Patent EP2559767 NA coding protein psRNATarget
LQ242140.1
ncRNA:20   AUAUGAAGUGGCCUGACAGG   1
  ||||*|||||||||||*|||
targets:1   UAUAAUUCACCGGACUAUCC   20

2.5 Sequence 8135 from Patent EP2985353 NA coding protein psRNATarget
EU971710.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||*|*|||||||||||||||
targets:196   CGGCUAAAAUUCACCGGACUGUCC   219

2.0 Zea mays clone 369445 mRNA sequence NA coding protein psRNATarget
EU964336.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||*|*|||||||||||||||
targets:356   CGGCUAAAAUUCACCGGACUGUCC   379

2.0 Zea mays clone 278065 mRNA sequence NA coding protein psRNATarget
BT019242.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||*|*|||||||||||||||
targets:733   CGGCUAAAAUUCACCGGACUGUCC   756

2.0 Zea mays clone Contig915.F mRNA sequence NA coding protein psRNATarget
BT065862.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||*|*|||||||||||||||
targets:1055   CGGCUAAAAUUCACCGGACUGUCC   1078

2.0 Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds NA coding protein psRNATarget
NM_001175661.1
ncRNA:24   GGCGAUAUGAAGUGGCCUGACAGG   1
  |*||||*|*|||||||||||||||
targets:1055   CGGCUAAAAUUCACCGGACUGUCC   1078

2.0 Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA NA coding protein psRNATarget
EZ105730.1
ncRNA:24   GGC-GAUAUGAAGUGGCCUGACAGG   1
  *||-|||||**||||||||||||||
targets:36   ACGACUAUAAAUCACCGGACUGUCC   60

2.0 TSA: Zea mays contig41388, mRNA sequence NA coding protein psRNATarget
EZ109324.1
ncRNA:24   GGC-GAUAUGAAGUGGCCUGACAGG   1
  *||-|||||**||||||||||||||
targets:10   ACGACUAUAAAUCACCGGACUGUCC   34

2.0 TSA: Zea mays contig44983, mRNA sequence NA coding protein psRNATarget
NM_001176009.1
ncRNA:24   GGC-GAUAUGAAGUGGCCUGACAGG   1
  *||-|||||**||||||||||||||
targets:2262   ACGACUAUAAAUCACCGGACUGUCC   2286

2.0 Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA NA coding protein psRNATarget
BT066975.1
ncRNA:24   GGC-GAUAUGAAGUGGCCUGACAGG   1
  *||-|||||**||||||||||||||
targets:2262   ACGACUAUAAAUCACCGGACUGUCC   2286

2.0 Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds NA coding protein psRNATarget
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