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BaseInfo

ncRNA ID novel_zma_miR2865
Species Zea mays
Class miRNA
Genome position Chr6:96821007-96821153 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 124 - AAUCUGGUGCAUCCAUUUCGCAUC - 147
Stem-loop(if miRNA) --   A                                                       C           
  UGC AGAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCAC AGAUACGUUCCC
  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||G
  ACG UUUACCUACGUGGUCUAAAUUUUACACGUGUACUCGUGGCAUGGGGAAACUCGUG UCUAUGCAAGGU
CU   C                                                       A           
Stem-loop sequence UGCAAGAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCACCAGAUACGUUCCCGUGGAACGUAUCUAGUGCUCAAAGGGGUACGGUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUUUCGCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008645476.2
ncRNA:24   CUACGCUUUACCUACGUGGUCUAA   1
  ||||=||||||*||||||||||||
targets:888   GAUGUGAAAUGAAUGCACCAGAUU   911

1.5 PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551532.1
ncRNA:24   CUACGCUUUACCUACGUGGUCUAA   1
  *|||*||||||*||||||||||||
targets:764   AAUGAGAAAUGAAUGCACCAGAUU   787

1.5 PREDICTED: Zea mays uncharacterized LOC100282291 (pco125364), transcript variant X1, mRNA NA coding protein psRNATarget