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BaseInfo

ncRNA ID novel_zma_miR2864
Species Zea mays
Class miRNA
Genome position Chr2:230921633-230921689 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 21
Mature sequence(if miRNA) 1 - AUUGGAUGGUAUUGAGUCGGU - 21
Stem-loop(if miRNA) --      UG        UC  -   CAA
  AUUGGA  GUAUUGAG  GG UUU   U
  ||||||  ||||||||  || |||
  UAACCU  UAUAACUC  CC AAA   C
CA      UA        UA  U   UAC
Stem-loop sequence AUUGGAUGGUAUUGAGUCGGUUUCAAUCCAUAAAUCCAUCUCAAUAUAUUCCAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551219.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |||||||||||||||||||||
targets:286   ACCGACUCAAUACCAUCCAAU   306

0.0 PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA NA coding protein psRNATarget
BT041309.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  ||||||||||||=||||||||
targets:102   ACCGACUCAAUAUCAUCCAAU   122

1.5 Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds NA coding protein psRNATarget
BT054344.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  ||||||||||||||||=||||
targets:1126   ACCGACUCAAUACCAUUCAAU   1146

1.5 Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds NA coding protein psRNATarget
NM_001152495.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  ||||||||||||||||=||||
targets:1126   ACCGACUCAAUACCAUUCAAU   1146

1.5 Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA NA coding protein psRNATarget
AY104840.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |=||||||||||||||=||||
targets:1320   AUCGACUCAAUACCAUUCAAU   1340

1.5 Zea mays PCO100726 mRNA sequence NA coding protein psRNATarget
XM_020552941.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |=|||||||||||||||||=|
targets:2239   AUCGACUCAAUACCAUCCAGU   2259

1.5 PREDICTED: Zea mays anthocyanidin 5,3-O-glucosyltransferase-like (LOC109946117), mRNA NA coding protein psRNATarget
NM_001350737.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  ||=||||||||||||||=|||
targets:4048   ACUGACUCAAUACCAUCUAAU   4068

2.5 Zea mays phospholipase D family protein (LOC100272416), mRNA NA coding protein psRNATarget
EU970241.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |||||||||||||||*|||||
targets:1118   ACCGACUCAAUACCAGCCAAU   1138

1.5 Zea mays clone 342550 mRNA sequence NA coding protein psRNATarget
LQ239247.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |=|||||||||||||*|||||
targets:73   AUCGACUCAAUACCACCCAAU   93

1.5 Sequence 5242 from Patent EP2985353 NA coding protein psRNATarget
JB167578.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |=|||||||||||||*|||||
targets:73   AUCGACUCAAUACCACCCAAU   93

1.5 Sequence 5242 from Patent EP2559767 NA coding protein psRNATarget
HI407117.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |=|||||||||||||*|||||
targets:73   AUCGACUCAAUACCACCCAAU   93

1.5 Sequence 5242 from Patent EP2074227 NA coding protein psRNATarget
XM_008654744.2
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |||||||=|||||||*|||||
targets:2153   ACCGACUUAAUACCACCCAAU   2173

2.5 PREDICTED: Zea mays GTPase-activating protein gyp7 (LOC103633061), mRNA NA coding protein psRNATarget
XM_020542630.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |*||||||||||=||||||||
targets:5878   AACGACUCAAUAUCAUCCAAU   5898

1.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542629.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |*||||||||||=||||||||
targets:5940   AACGACUCAAUAUCAUCCAAU   5960

1.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542631.1
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  |*||||||||||=||||||||
targets:6355   AACGACUCAAUAUCAUCCAAU   6375

1.5 PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008661191.2
ncRNA:21   UGGCUGAGUUAUGGUAGGUUA   1
  *||*|||||||*|||||||||
targets:64   UCCAACUCAAUUCCAUCCAAU   84

2.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase RING1-like (LOC103638198), mRNA NA coding protein psRNATarget
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