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BaseInfo

ncRNA ID novel_zma_miR2861
Species Zea mays
Class miRNA
Genome position Chr2:221016185-221016297 [+]
Reference genome RefGen_v4
Source SRR2089713
Length 24
Mature sequence(if miRNA) 90 - UAAAAUGGAAUAAAAUGAUGGGAC - 113
Stem-loop(if miRNA) --   UA                    CCA           C             C
  CCC  CAUUUUAUUCCAUUUUAGUU   AAAUUGCCAAA AUAGAAACUAAAA U
  |||  ||||||||||||||||||||   ||||||||||| ||||||||||||| C
  GGG  GUAAAAUAAGGUAAAAUCAG   UUUAACGGUUU UAUCUUUGAUUUU U
CA   UA                    AUA           A             A
Stem-loop sequence CCCUACAUUUUAUUCCAUUUUAGUUCCAAAAUUGCCAAACAUAGAAACUAAAACUCUAUUUUAGUUUCUAUAUUUGGCAAUUUAUAGACUAAAAUGGAAUAAAAUGAUGGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654984.2
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||||||||||||||||||||||||
targets:2934   GUCCCAUCAUUUUAUUCCAUUUUA   2957

0.0 PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||||||||||||||||||||||||
targets:171   GUCCCAUCAUUUUAUUCCAUUUUA   194

0.0 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
BT019141.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**|||||||||||||||||
targets:295   GUCCCUCCAUUUUAUUCCAUUUUA   318

2.0 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
JB167174.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||||||||||||||||||||||||
targets:46   GUCCCAUCAUUUUAUUCCAUUUUA   69

0.0 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
JB167174.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**|||||||||||||||||
targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193

2.0 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||||||||||||||||||||||||
targets:46   GUCCCAUCAUUUUAUUCCAUUUUA   69

0.0 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**|||||||||||||||||
targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193

2.0 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
HI406713.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||||||||||||||||||||||||
targets:46   GUCCCAUCAUUUUAUUCCAUUUUA   69

0.0 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
HI406713.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**|||||||||||||||||
targets:170   GUCCCUCCAUUUUAUUCCAUUUUA   193

2.0 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||||||||||||||=||||||
targets:1569   GUCCCAUCAUUUUAUUCUAUUUUA   1592

1.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
HI403040.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||||||||||||||=||||||
targets:32   GUCCCAUCAUUUUAUUCUAUUUUA   55

1.5 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
JB163501.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||||||||||||||=||||||
targets:32   GUCCCAUCAUUUUAUUCUAUUUUA   55

1.5 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||||||||||||||=||||||
targets:32   GUCCCAUCAUUUUAUUCUAUUUUA   55

1.5 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
BT063047.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||||||||
targets:2100   GUCCCUUCAUUUUAUUCCAUUUUA   2123

1.0 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||||||||
targets:2100   GUCCCUUCAUUUUAUUCCAUUUUA   2123

1.0 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
HI403052.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||||||||
targets:30   GUCCCUUCAUUUUAUUCCAUUUUA   53

1.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
JB163513.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||||||||
targets:30   GUCCCUUCAUUUUAUUCCAUUUUA   53

1.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||||||||
targets:30   GUCCCUUCAUUUUAUUCCAUUUUA   53

1.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||||||=||||||
targets:1669   GUCCCUUCAUUUUAUUCUAUUUUA   1692

2.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||||||=||||||
targets:839   GUCCCUUCAUUUUAUUCUAUUUUA   862

2.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
JB163514.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||||-|||||||||||||||||||
targets:32   GUCC-AUCAUUUUAUUCCAUUUUA   54

0.0 Sequence 1178 from Patent EP2559767 NA coding protein psRNATarget
HI403053.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||||-|||||||||||||||||||
targets:32   GUCC-AUCAUUUUAUUCCAUUUUA   54

0.0 Sequence 1178 from Patent EP2074227 NA coding protein psRNATarget
LQ235183.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||||-|||||||||||||||||||
targets:32   GUCC-AUCAUUUUAUUCCAUUUUA   54

0.0 Sequence 1178 from Patent EP2985353 NA coding protein psRNATarget
JB163516.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||||||=||||||
targets:30   GUCCCUUCAUUUUAUUCUAUUUUA   53

2.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
HI403055.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||||||=||||||
targets:30   GUCCCUUCAUUUUAUUCUAUUUUA   53

2.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
JB163502.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||=||||||||||
targets:30   GUCCCUUCAUUUUGUUCCAUUUUA   53

2.5 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||||||=||||||
targets:30   GUCCCUUCAUUUUAUUCUAUUUUA   53

2.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
HI403041.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||=||||||||||
targets:30   GUCCCUUCAUUUUGUUCCAUUUUA   53

2.5 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
LQ235171.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||=||||||||||
targets:30   GUCCCUUCAUUUUGUUCCAUUUUA   53

2.5 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
LQ235180.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||||||=||||||
targets:30   GUCCCUUCAUUUUAUUCUAUUUUA   53

2.5 Sequence 1175 from Patent EP2985353 NA coding protein psRNATarget
JB163511.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||||||=||||||
targets:30   GUCCCUUCAUUUUAUUCUAUUUUA   53

2.5 Sequence 1175 from Patent EP2559767 NA coding protein psRNATarget
HI403050.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*|||||||||||=||||||
targets:30   GUCCCUUCAUUUUAUUCUAUUUUA   53

2.5 Sequence 1175 from Patent EP2074227 NA coding protein psRNATarget
HI410280.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||=||*|||||||=||||||||||
targets:6   GUUCCUUCAUUUUGUUCCAUUUUA   29

2.5 Sequence 8405 from Patent EP2074227 NA coding protein psRNATarget
LQ242410.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||=||*|||||||=||||||||||
targets:6   GUUCCUUCAUUUUGUUCCAUUUUA   29

2.5 Sequence 8405 from Patent EP2985353 NA coding protein psRNATarget
JB170741.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  ||=||*|||||||=||||||||||
targets:6   GUUCCUUCAUUUUGUUCCAUUUUA   29

2.5 Sequence 8405 from Patent EP2559767 NA coding protein psRNATarget
EU956227.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||*|||||
targets:1270   GUCCCUUCAUUUUAUUCCUUUUUA   1293

2.5 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**|||||||||||||||||
targets:1000   GUCCCUACAUUUUAUUCCAUUUUA   1023

2.0 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
EU942443.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||*|||||
targets:493   GUCCCUUCAUUUUAUUCCUUUUUA   516

2.5 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
LQ238549.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**|||||||||||||||||
targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102

2.0 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
JB166880.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**|||||||||||||||||
targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102

2.0 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
HI406419.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**|||||||||||||||||
targets:79   GUCCCUCCAUUUUAUUCCAUUUUA   102

2.0 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
HI407221.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||*|||||
targets:10   GUCCCUUCAUUUUAUUCCUUUUUA   33

2.5 Sequence 5346 from Patent EP2074227 NA coding protein psRNATarget
LQ239351.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||*|||||
targets:10   GUCCCUUCAUUUUAUUCCUUUUUA   33

2.5 Sequence 5346 from Patent EP2985353 NA coding protein psRNATarget
JB167682.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||*||||||||||||*|||||
targets:10   GUCCCUUCAUUUUAUUCCUUUUUA   33

2.5 Sequence 5346 from Patent EP2559767 NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||=|**|||||||||||||||||
targets:2152   GUCUCUCCAUUUUAUUCCAUUUUA   2175

2.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||=|**|||||||||||||||||
targets:843   GUCUCUACAUUUUAUUCCAUUUUA   866

2.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||=|**|||||||||||||||||
targets:843   GUCUCUACAUUUUAUUCCAUUUUA   866

2.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001320812.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  *||*|*||||||||||=|||||||
targets:2401   AUCGCUUCAUUUUAUUUCAUUUUA   2424

2.5 Zea mays Protein HAPLESS 2 (LOC100274016), mRNA NA coding protein psRNATarget
XM_008669344.2
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  *||*|*||||||||||=|||||||
targets:2047   AUCGCUUCAUUUUAUUUCAUUUUA   2070

2.5 PREDICTED: Zea mays Protein HAPLESS 2 (LOC100274016), transcript variant X1, mRNA NA coding protein psRNATarget
BT061735.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  *||*|*||||||||||=|||||||
targets:1919   AUCGCUUCAUUUUAUUUCAUUUUA   1942

2.5 Zea mays full-length cDNA clone ZM_BFb0178N21 mRNA, complete cds NA coding protein psRNATarget
NM_001148401.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  *||*|*||||||||||=|||||||
targets:1919   AUCGCUUCAUUUUAUUUCAUUUUA   1942

2.5 Zea mays Protein HAPLESS 2 (LOC100274016), mRNA NA coding protein psRNATarget
BT069618.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  *||*|*||||||||||=|||||||
targets:1568   AUCGCUUCAUUUUAUUUCAUUUUA   1591

2.5 Zea mays full-length cDNA clone ZM_BFb0195L03 mRNA, complete cds NA coding protein psRNATarget
EZ052166.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||***||||||||||||||||
targets:780   GUCCCUAGAUUUUAUUCCAUUUUA   803

3.0 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
EU945607.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**||*||||||||||||||
targets:144   GUCCCUCCAAUUUAUUCCAUUUUA   167

3.0 Zea mays clone 279279 mRNA sequence NA coding protein psRNATarget
LQ235124.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**||*||||||||||||||
targets:30   GUCCCUACACUUUAUUCCAUUUUA   53

3.0 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
JB163455.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**||*||||||||||||||
targets:30   GUCCCUACACUUUAUUCCAUUUUA   53

3.0 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
HI402994.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||||**||*||||||||||||||
targets:30   GUCCCUACACUUUAUUCCAUUUUA   53

3.0 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
EU967664.1
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||=|**||*||||||||||||||
targets:1127   GUCUCUCCACUUUAUUCCAUUUUA   1150

3.0 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   CAGGGUAGUAAAAUAAGGUAAAAU   1
  |||=|**||*||||||||||||||
targets:1127   GUCUCUCCACUUUAUUCCAUUUUA   1150

3.0 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
LQ235521.1
ncRNA:19   UAGUAAAAUAAGGUAAAAU   1
  *||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUA   19

1.0 Sequence 1516 from Patent EP2985353 NA coding protein psRNATarget
JB163892.1
ncRNA:19   UAGUAAAAUAAGGUAAAAU   1
  *||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUA   19

1.0 Sequence 1556 from Patent EP2559767 NA coding protein psRNATarget
HI403431.1
ncRNA:19   UAGUAAAAUAAGGUAAAAU   1
  *||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUA   19

1.0 Sequence 1556 from Patent EP2074227 NA coding protein psRNATarget
HI403391.1
ncRNA:19   UAGUAAAAUAAGGUAAAAU   1
  *||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUA   19

1.0 Sequence 1516 from Patent EP2074227 NA coding protein psRNATarget
LQ235561.1
ncRNA:19   UAGUAAAAUAAGGUAAAAU   1
  *||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUA   19

1.0 Sequence 1556 from Patent EP2985353 NA coding protein psRNATarget
JB163852.1
ncRNA:19   UAGUAAAAUAAGGUAAAAU   1
  *||||||||||||||||||
targets:1   UUCAUUUUAUUCCAUUUUA   19

1.0 Sequence 1516 from Patent EP2559767 NA coding protein psRNATarget
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