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BaseInfo

ncRNA ID	novel_zma_miR2860
Species	Zea mays
Class	miRNA
Genome position	Chr2:216369126-216369201 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2287165;SRR2089698;SRR2089701
Length	24
Mature sequence(if miRNA)	53 - AAAACUGAGAAAAAAACACGACUA - 76
Stem-loop(if miRNA)	--   A         U         GU      -  UCU   GUC UGUUUUUUU CUCAGUUUU  CCUUCU GU   A   ||| ||||||||| |||||||||  |||||| ||   CAG ACAAAAAAA GAGUCAAAA  GGAAGG CG   U AU   C         -         UG      U  CAA
Stem-loop sequence	GUCAUGUUUUUUUUCUCAGUUUUGUCCUUCUGUUCUAUAACGCUGGAAGGGUAAAACUGAGAAAAAAACACGACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008679472.2	ncRNA:24   AUCAGCACAAAAAAAGAGUCAAAA   1   |||||||||||||||||||||||| targets:2593   UAGUCGUGUUUUUUUCUCAGUUUU   2616 Target Full Sequence	0.0	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679473.2	ncRNA:24   AUCAGCACAAAAAAAGAGUCAAAA   1   |||||||||||||||||||||||| targets:2796   UAGUCGUGUUUUUUUCUCAGUUUU   2819 Target Full Sequence	0.0	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT034169.1	ncRNA:24   AUCAGCACAAAAAAA-GAGUCAAAA   1   |||||||||||||||-||||||||| targets:1685   UAGUCGUGUUUUUUUUCUCAGUUUU   1709 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0033E10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137340.1	ncRNA:24   AUCAGCACAAAAAAA-GAGUCAAAA   1   |||||||||||||||-||||||||| targets:1685   UAGUCGUGUUUUUUUUCUCAGUUUU   1709 Target Full Sequence	3.0	Zea mays Serinc-domain containing serine and sphingolipid biosynthesis protein (pco062914), mRNA	NA	coding protein	psRNATarget
XM_008670543.2	ncRNA:24   AUCAGCACAAAAAAAGAGUCAAAA   1   |=|||*|||||||||||=|||||| targets:1599   UGGUCAUGUUUUUUUCUUAGUUUU   1622 Target Full Sequence	2.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 (LOC103645822), mRNA	NA	coding protein	psRNATarget
XM_008681845.2	ncRNA:24   AUCAGCACAAAAAAAGAGUCAAAA   1   ||||**|||||||||||||*|||| targets:254   UAGUAAUGUUUUUUUCUCAAUUUU   277 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein 1U4 (LOC103655026), mRNA	NA	coding protein	psRNATarget
XM_008680007.2	ncRNA:24   AUCAGCACAAAAAAAGAGUCAAAA   1   ||*|-||||*|||||||||||||| targets:849   UAAU-GUGUAUUUUUCUCAGUUUU   871 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103653028 (LOC103653028), mRNA	NA	coding protein	psRNATarget
XM_008675361.2	ncRNA:24   AUCAGCACAAAAAAAGAGUCAAAA   1   ||*|=||*|*|||||||||||||* targets:2275   UAAUUGUAUGUUUUUCUCAGUUUC   2298 Target Full Sequence	3.0	PREDICTED: Zea mays putative transcription factor bHLH041 (LOC103649622), mRNA	NA	coding protein	psRNATarget