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BaseInfo

ncRNA ID	novel_zma_miR2859
Species	Zea mays
Class	miRNA
Genome position	Chr2:189468681-189468861 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR5451006;SRR2089708
Length	24
Mature sequence(if miRNA)	158 - AUUCAUCGGACUGUUCGGUGGUGC - 181
Stem-loop(if miRNA)	-----   AG  U    AA       --        ----------------         U      AG    A  ACU  A       A   U              GCC  GC GGUC  CGAUGAA  GUGGCCGC                UCUCGGGAA CGACGG  UUGU CG   AU AUUCACC GAC GUUCGGUGG      |||  || ||||  |||||||  ||||||||                ||||||||| ||||||  |||| ||   || ||||||| ||| ||||||||U      UGG  UG UCAG  GCUACUU  UAUCGGUG                AGGGCUCUU GCUGCU  AGCG GC   UA UGAGUGG CUG CAGGCCACG CGUGG   CU  -    --       AA        CGGCGGAACAAGUAAA         -      CA    -  GCC  C       C   U
Stem-loop sequence	GCCAGGCUGGUCAACGAUGAAGUGGCCGCUCUCGGGAAUCGACGGAGUUGUACGACUAUAAUUCACCAGACUGUUCGGUGGUGCACCGGACUGUCCGGUGAGUCAUCCGCGGCGAACUCGUCGUUCUCGGGAAAAUGAACAAGGCGGCGUGGCUAUAAUUCAUCGGACUGUUCGGUGGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT086229.2	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   |*|||||||=||||||||=||||| targets:651   GAACCACCGGACAGUCCGGUGAAU   674 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:15   GCAC-ACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:15   GCAC-ACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:15   GCAC-ACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||*=|||||=||||||||=||||| targets:684   GCUUCACCGGACAGUCCGGUGAAU   707 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:604   GCAC-ACCGGACAGUCCGGUGAAU   626 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:740   GCAC-ACCGGACAGUCCGGUGAAU   762 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:740   GCAC-ACCGGACAGUCCGGUGAAU   762 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:700   GCAC-ACCGGACAGUCCGGUGAAU   722 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:701   GCAC-ACCGGACAGUCCGGUGAAU   723 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:701   GCAC-ACCGGACAGUCCGGUGAAU   723 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:565   GCAC-ACCGGACAGUCCGGUGAAU   587 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:565   GCAC-ACCGGACAGUCCGGUGAAU   587 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:413   GCAC-ACCGGACAGUCCGGUGAAU   435 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   ||||-||||=||||||||=||||| targets:4613   GCAC-ACCGGACAGUCCGGUGAAU   4635 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   CGUG-GUGGCUUGUCAGGCUACUUA   1   **||-|||||=||||||||=||||| targets:27   UGACUCACCGGACAGUCCGGUGAAU   51 Target Full Sequence	2.5	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   |==|-||||=||||||||=||||| targets:826   GUGC-ACCGGACAGUCCGGUGAAU   848 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   |==|-||||=||||||||=||||| targets:826   GUGC-ACCGGACAGUCCGGUGAAU   848 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
JB170098.1	ncRNA:20   GUGGCUUGUCAGGCUACUUA   1   |||||=||||||||=||||| targets:1   CACCGGACAGUCCGGUGAAU   20 Target Full Sequence	2.5	Sequence 7762 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241767.1	ncRNA:20   GUGGCUUGUCAGGCUACUUA   1   |||||=||||||||=||||| targets:1   CACCGGACAGUCCGGUGAAU   20 Target Full Sequence	2.5	Sequence 7762 from Patent EP2985353	NA	coding protein	psRNATarget
HI409637.1	ncRNA:20   GUGGCUUGUCAGGCUACUUA   1   |||||=||||||||=||||| targets:1   CACCGGACAGUCCGGUGAAU   20 Target Full Sequence	2.5	Sequence 7762 from Patent EP2074227	NA	coding protein	psRNATarget
HI409990.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   |==|-||||=|||||||*|||||| targets:36   GUGC-ACCGGACAGUCCAAUGAAU   58 Target Full Sequence	2.5	Sequence 8115 from Patent EP2074227	NA	coding protein	psRNATarget
JB170451.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   |==|-||||=|||||||*|||||| targets:36   GUGC-ACCGGACAGUCCAAUGAAU   58 Target Full Sequence	2.5	Sequence 8115 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242120.1	ncRNA:24   CGUGGUGGCUUGUCAGGCUACUUA   1   |==|-||||=|||||||*|||||| targets:36   GUGC-ACCGGACAGUCCAAUGAAU   58 Target Full Sequence	2.5	Sequence 8115 from Patent EP2985353	NA	coding protein	psRNATarget