Search result

BaseInfo

ncRNA ID	novel_zma_miR2847
Species	Zea mays
Class	miRNA
Genome position	Chr1:5702197-5702381 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	23
Mature sequence(if miRNA)	163 - UAUUAUCUCUAGUACAUUCAAAC - 185
Stem-loop(if miRNA)	--       C    U  C     U   -    ------CUACAAA     CUAGUACAAUUAACUAGAUAACAAACAUCUAGCUAACUAUUAGCUA   UUGAAUG ACUG AG UAAUA UUA UUGC             AAUUG                                              A   ||||||| |||| || ||||| ||| ||||             |||||   AACUUAC UGAU UC AUUAU AAU GACG             UCUGU                                              U CA       A    C  U     C   C    AUUUUAAUCAACU     AAAUUUGUUAGAUCGAUUAUCGAGUUGAUAAUCGAUAAAAAUCGUU
Stem-loop sequence	UUGAAUGCACUGUAGCUAAUAUUUAUUGCCUACAAAAAUUGCUAGUACAAUUAACUAGAUAACAAACAUCUAGCUAACUAUUAGCUAAUUUGCUAAAAAUAGCUAAUAGUUGAGCUAUUAGCUAGAUUGUUUAAAUGUCUUCAACUAAUUUUAGCAGCUAACUAUUAUCUCUAGUACAUUCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008646094.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||||||||||*||||| targets:612   GUUUGAAUGUACUAGAGCUAAUA   634 Target Full Sequence	1.5	PREDICTED: Zea mays inactive poly [ADP-ribose] polymerase RCD1 (LOC103625711), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678482.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:3279   GUUUGAAUGCACUAGAGAUAAUA   3301 Target Full Sequence	1.0	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001317389.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:3282   GUUUGAAUGCACUAGAGAUAAUA   3304 Target Full Sequence	1.0	Zea mays Retinoblastoma-related protein 1 (LOC100217179), mRNA	NA	coding protein	psRNATarget
XM_008678484.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:3261   GUUUGAAUGCACUAGAGAUAAUA   3283 Target Full Sequence	1.0	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008678483.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:3280   GUUUGAAUGCACUAGAGAUAAUA   3302 Target Full Sequence	1.0	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678485.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:2828   GUUUGAAUGCACUAGAGAUAAUA   2850 Target Full Sequence	1.0	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT041400.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:1665   GUUUGAAUGCACUAGAGAUAAUA   1687 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0115C19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147983.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:1665   GUUUGAAUGCACUAGAGAUAAUA   1687 Target Full Sequence	1.0	Zea mays zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (LOC100273565), mRNA	NA	coding protein	psRNATarget
BT038068.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:589   GUUUGAAUGCACUAGAGAUAAUA   611 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0210C05 mRNA, complete cds	NA	coding protein	psRNATarget
EZ085685.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   ||||||||*|||||||||||||| targets:146   GUUUGAAUAUACUAGAGAUAAUA   168 Target Full Sequence	1.0	TSA: Zea mays contig21329, mRNA sequence	NA	coding protein	psRNATarget
LQ240971.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:10   GUUUGAAUGCACUAGAGAUAAUA   32 Target Full Sequence	1.0	Sequence 6966 from Patent EP2985353	NA	coding protein	psRNATarget
JB169302.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:10   GUUUGAAUGCACUAGAGAUAAUA   32 Target Full Sequence	1.0	Sequence 6966 from Patent EP2559767	NA	coding protein	psRNATarget
HI408841.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||||||||| targets:10   GUUUGAAUGCACUAGAGAUAAUA   32 Target Full Sequence	1.0	Sequence 6966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235062.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||||||||||*||||| targets:106   GUUUGAAUGUACUAGAGCUAAUA   128 Target Full Sequence	1.5	Sequence 1057 from Patent EP2985353	NA	coding protein	psRNATarget
HI402932.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||||||||||*||||| targets:106   GUUUGAAUGUACUAGAGCUAAUA   128 Target Full Sequence	1.5	Sequence 1057 from Patent EP2074227	NA	coding protein	psRNATarget
JB163393.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||||||||||*||||| targets:106   GUUUGAAUGUACUAGAGCUAAUA   128 Target Full Sequence	1.5	Sequence 1057 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||*|*||||||||||||| targets:666   GUUUGAACGCACUAGAGAUAAUA   688 Target Full Sequence	2.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:1956   GUUUGAAUGCACUAGAGCUAAUA   1978 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658477.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||*|||||| targets:4240   GUUUGAAUGCACUAGAAAUAAUA   4262 Target Full Sequence	2.5	PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542354.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*||||||*|||||| targets:4240   GUUUGAAUGCACUAGAAAUAAUA   4262 Target Full Sequence	2.5	PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550366.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:360   GUUUGAAUGAACUAGAGCUAAUA   382 Target Full Sequence	2.5	PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008676314.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:360   GUUUGAAUGAACUAGAGCUAAUA   382 Target Full Sequence	2.5	PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676313.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:360   GUUUGAAUGAACUAGAGCUAAUA   382 Target Full Sequence	2.5	PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008676315.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:360   GUUUGAAUGAACUAGAGCUAAUA   382 Target Full Sequence	2.5	PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008674165.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:330   GUUUGAAUGAACUAGAGCUAAUA   352 Target Full Sequence	2.5	PREDICTED: Zea mays Cytosolic sulfotransferase 17 (LOC100273019), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550368.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:360   GUUUGAAUGAACUAGAGCUAAUA   382 Target Full Sequence	2.5	PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_008676312.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:360   GUUUGAAUGAACUAGAGCUAAUA   382 Target Full Sequence	2.5	PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020550369.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:360   GUUUGAAUGAACUAGAGCUAAUA   382 Target Full Sequence	2.5	PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X13, mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:3614   GUUUGAAUGCACUAGAGCUAAUA   3636 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:3614   GUUUGAAUGCACUAGAGCUAAUA   3636 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550364.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:360   GUUUGAAUGAACUAGAGCUAAUA   382 Target Full Sequence	2.5	PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X5, mRNA	NA	coding protein	psRNATarget
NM_001175005.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:853   GUUUGAAUGCACUAGAGCUAAUA   875 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA	NA	coding protein	psRNATarget
BT063644.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:853   GUUUGAAUGCACUAGAGCUAAUA   875 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083749.2	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:1445   GUUUGAAUGCACUAGAGCUAAUA   1467 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0035A22 mRNA, complete cds	NA	coding protein	psRNATarget
BT067062.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   ||||||||*||||||||*||||| targets:788   GUUUGAAUUUACUAGAGCUAAUA   810 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds	NA	coding protein	psRNATarget
DQ244933.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:648   GUUUGAAUGCACUAGAGCUAAUA   670 Target Full Sequence	2.5	Zea mays clone 11846 mRNA sequence	NA	coding protein	psRNATarget
HI402970.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:13   GUUUGAAUGCACUAGAGCUAAUA   35 Target Full Sequence	2.5	Sequence 1095 from Patent EP2074227	NA	coding protein	psRNATarget
JB163431.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:13   GUUUGAAUGCACUAGAGCUAAUA   35 Target Full Sequence	2.5	Sequence 1095 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235100.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:13   GUUUGAAUGCACUAGAGCUAAUA   35 Target Full Sequence	2.5	Sequence 1095 from Patent EP2985353	NA	coding protein	psRNATarget
JB169148.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:10   GUUUGAAUGCACUAGAGCUAAUA   32 Target Full Sequence	2.5	Sequence 6812 from Patent EP2559767	NA	coding protein	psRNATarget
HI408687.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:10   GUUUGAAUGCACUAGAGCUAAUA   32 Target Full Sequence	2.5	Sequence 6812 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240817.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:10   GUUUGAAUGCACUAGAGCUAAUA   32 Target Full Sequence	2.5	Sequence 6812 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239048.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:9   GUUUGAAUGCACUAGAGCUAAUA   31 Target Full Sequence	2.5	Sequence 5043 from Patent EP2985353	NA	coding protein	psRNATarget
HI406918.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:9   GUUUGAAUGCACUAGAGCUAAUA   31 Target Full Sequence	2.5	Sequence 5043 from Patent EP2074227	NA	coding protein	psRNATarget
JB167379.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:9   GUUUGAAUGCACUAGAGCUAAUA   31 Target Full Sequence	2.5	Sequence 5043 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238899.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||*|||||||||*||||| targets:1   GUUUGAACGUACUAGAGCUAAUA   23 Target Full Sequence	2.5	Sequence 4894 from Patent EP2985353	NA	coding protein	psRNATarget
HI406769.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||*|||||||||*||||| targets:1   GUUUGAACGUACUAGAGCUAAUA   23 Target Full Sequence	2.5	Sequence 4894 from Patent EP2074227	NA	coding protein	psRNATarget
JB167230.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||*|||||||||*||||| targets:1   GUUUGAACGUACUAGAGCUAAUA   23 Target Full Sequence	2.5	Sequence 4894 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238928.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:9   GUUUGAAUGCACUAGAGCUAAUA   31 Target Full Sequence	2.5	Sequence 4923 from Patent EP2985353	NA	coding protein	psRNATarget
JB167259.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:9   GUUUGAAUGCACUAGAGCUAAUA   31 Target Full Sequence	2.5	Sequence 4923 from Patent EP2559767	NA	coding protein	psRNATarget
HI406798.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:9   GUUUGAAUGCACUAGAGCUAAUA   31 Target Full Sequence	2.5	Sequence 4923 from Patent EP2074227	NA	coding protein	psRNATarget
HI409979.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:75   GUUUGAAUGCACUAGAGCUAAUA   97 Target Full Sequence	2.5	Sequence 8104 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242109.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:75   GUUUGAAUGCACUAGAGCUAAUA   97 Target Full Sequence	2.5	Sequence 8104 from Patent EP2985353	NA	coding protein	psRNATarget
JB170440.1	ncRNA:23   CAAACUUACAUGAUCUCUAUUAU   1   |||||||||*|||||||*||||| targets:75   GUUUGAAUGCACUAGAGCUAAUA   97 Target Full Sequence	2.5	Sequence 8104 from Patent EP2559767	NA	coding protein	psRNATarget