Search result

BaseInfo

ncRNA ID	novel_zma_miR2832
Species	Zea mays
Class	miRNA
Genome position	Chr1:40160325-40160414 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR2089703;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - AUCCAGAAGAGGAUUGGAGGGGAU - 24
Stem-loop(if miRNA)	--         A                              CAU   AUCCAGAAG GGAUUGGAGGGGAUUCAAUCCCCUUCUAGU   U   ||||||||| ||||||||||||||||||||||||||||||   UAGGUCUUC CCUAACCUCCCCUAAGUUAGGGGAAGAUCA   U AU         C                              AUU
Stem-loop sequence	AUCCAGAAGAGGAUUGGAGGGGAUUCAAUCCCCUUCUAGUCAUUUUUAACUAGAAGGGGAUUGAAUCCCCUCCAAUCCCCUUCUGGAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ049235.1	ncRNA:23   AGGGGAGGUUAGGAGAAGACCUA   1   ||||||=||||||*||||||||| targets:1   UCCCCUUCAAUCCCCUUCUGGAU   23 Target Full Sequence	2.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   UAGGGGAGGUUAGGAGAAGACCUA   1   |*||=|||=|||||*||||||||| targets:4797   AACCUCUCUAAUCCCCUUCUGGAU   4820 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   UAGGGGAGGUUAGGAGAAGACCUA   1   |*||=|||=|||||*||||||||| targets:5024   AACCUCUCUAAUCCCCUUCUGGAU   5047 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget