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BaseInfo

ncRNA ID novel_zma_miR2824
Species Zea mays
Class miRNA
Genome position Chr1:258706182-258706242 [-]
Reference genome RefGen_v4
Source SRR2089713;SRR2089715;SRR2287031;SRR2287160;SRR2287161;SRR2287165;SRR2089700
Length 24
Mature sequence(if miRNA) 38 - AGGAUUGAAGGGGAUUAAGGGGGA - 61
Stem-loop(if miRNA) --       A        AA          A
  AGGAUUG AGGGGAUU  GGGGGAAAUA G
  ||||||| ||||||||  ||||||||||
  UCCUAAU UCCUCUAA  UCCCCUUUAU U
CU       C        -G          U
Stem-loop sequence AGGAUUGAAGGGGAUUAAGGGGGAAAUAAGUUUAUUUCCCCUGAAUCUCCUCUAAUCCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB170124.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||||||||||||||||||||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

0.0 Sequence 7788 from Patent EP2559767 NA coding protein psRNATarget
HI409663.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||||||||||||||||||||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

0.0 Sequence 7788 from Patent EP2074227 NA coding protein psRNATarget
LQ241793.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||||||||||||||||||||||||
targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90

0.0 Sequence 7788 from Patent EP2985353 NA coding protein psRNATarget
EU961132.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||||||||||||||||||||||||
targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844

0.0 Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds NA coding protein psRNATarget
BT040716.2
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||||||||||||||||||||||||
targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883

0.0 Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds NA coding protein psRNATarget
BT066291.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||||||||||||||||||||||||
targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888

0.0 Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds NA coding protein psRNATarget
NM_001147738.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||||||||||||||||||||||||
targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888

0.0 Zea mays putative glutathione peroxidase (LOC100273297), mRNA NA coding protein psRNATarget
JB163736.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |||||||*||||||=|||||||||
targets:69   UCCCCCUGAAUCCCUUUCAAUCCU   92

2.5 Sequence 1400 from Patent EP2559767 NA coding protein psRNATarget
LQ235405.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |||||||*||||||=|||||||||
targets:69   UCCCCCUGAAUCCCUUUCAAUCCU   92

2.5 Sequence 1400 from Patent EP2985353 NA coding protein psRNATarget
HI403275.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |||||||*||||||=|||||||||
targets:69   UCCCCCUGAAUCCCUUUCAAUCCU   92

2.5 Sequence 1400 from Patent EP2074227 NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |==|||||||||||||*|||||||
targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100

1.5 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
HI402991.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||=||||*|||||||||||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

2.0 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
LQ235121.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||=||||*|||||||||||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

2.0 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
JB163452.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||=||||*|||||||||||||||*
targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107

2.0 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
JB163954.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |||||||*||||||||*|||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

2.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
HI403493.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |||||||*||||||||*|||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

2.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |||||||*||||||||*|||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

2.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
LQ235485.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |=|=|||*||||||||*|||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

2.5 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
JB163816.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |=|=|||*||||||||*|||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

2.5 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
HI403355.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |=|=|||*||||||||*|||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

2.5 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
BT088155.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||=|=||*||||||||*|||||||
targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486

2.5 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EU942844.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  *****=**||||||||||||||||
targets:133   GAAAAUCAAAUCCCCUUCAAUCCU   156

3.0 Zea mays clone 1540330 mRNA sequence NA coding protein psRNATarget
NM_001320255.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |*=|=||*|||=||||||||||||
targets:1314   UGUCUCUAAAUUCCCUUCAAUCCU   1337

2.5 Zea mays hypothetical protein (LOC100276558), transcript variant 1, mRNA NA coding protein psRNATarget
EZ055746.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |=|*|||*||||||||*|||||||
targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98

2.5 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
AY110351.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  |=|*|||*||||||||*|||||||
targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64

2.5 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
XM_020545649.1
ncRNA:24   AGGGGGAAUUAGGGGAAGUUAGGA   1
  ||*||||*|*|||||||||||||*
targets:715   UCACCCUCAUUCCCCUUCAAUCCC   738

3.0 PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA NA coding protein psRNATarget
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