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BaseInfo

ncRNA ID	novel_zma_miR2822
Species	Zea mays
Class	miRNA
Genome position	Chr1:287712266-287712375 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR2089715;SRR2287165;SRR2089701;SRR2089702;SRR2089704;SRR2089708
Length	24
Mature sequence(if miRNA)	87 - GGGAGCAAGUGGAAUGAAGGGGAU - 110
Stem-loop(if miRNA)	--         U  -    AA       A                UC        A   GGGAGCAAG GG AAUG  GGGGAUU AGGGGGCUAGAAUCCC  ACUAUUUA A   ||||||||| || ||||  ||||||| ||||||||||||||||  ||||||||   CCCUCGUUC CC UUAC  CUCCUAA UUCCCCGAUCUUAGGG  UGAUAAGU A AA         -  A    CC       C                GA        U
Stem-loop sequence	GGGAGCAAGUGGAAUGAAGGGGAUUAAGGGGGCUAGAAUCCCUCACUAUUUAAAAUUGAAUAGUAGGGGAUUCUAGCCCCUUCAAUCCUCCCCAUUACCCUUGCUCCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406027.1	ncRNA:24   UAGGGGAAGUAAGGUGAACGAGGG   1   ||||||||||||=||||||||||| targets:97   AUCCCCUUCAUUUCACUUGCUCCC   120 Target Full Sequence	1.5	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:24   UAGGGGAAGUAAGGUGAACGAGGG   1   ||||||||||||=||||||||||| targets:97   AUCCCCUUCAUUUCACUUGCUCCC   120 Target Full Sequence	1.5	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
JB166488.1	ncRNA:24   UAGGGGAAGUAAGGUGAACGAGGG   1   ||||||||||||=||||||||||| targets:97   AUCCCCUUCAUUUCACUUGCUCCC   120 Target Full Sequence	1.5	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:24   UAGGGGAAGUAAGGUGAACGAGGG   1   ||||||||||||=||||||||||| targets:2633   AUCCCCUUCAUUUCACUUGCUCCC   2656 Target Full Sequence	1.5	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT062966.1	ncRNA:24   UAGGGGAAGUAAGGUGAACGAGGG   1   ||||||||||||=||||||||||| targets:2633   AUCCCCUUCAUUUCACUUGCUCCC   2656 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:24   UAGGGGAAGUAAGGUGAACGAGGG   1   ||||||||||||=||||||||||| targets:2721   AUCCCCUUCAUUUCACUUGCUCCC   2744 Target Full Sequence	1.5	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT017823.1	ncRNA:24   UAGGGGAAGUAAGGUGAACGAGGG   1   ||||=|||||*||||=|||||||| targets:861   AUCCUCUUCAAUCCAUUUGCUCCC   884 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:24   UAGGGGAAGUAAGGUGAACGAGGG   1   ||||=|||||*||||=|||||||| targets:3489   AUCCUCUUCAAUCCAUUUGCUCCC   3512 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget