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BaseInfo

ncRNA ID	osa-miR395y
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:3299815-3299924 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	81 - GUGAAGUGUUUGGGGGAACUC - 101
Stem-loop(if miRNA)	U   C  AG         G             -   AAC     UUACUC     CA  GGC CC  GAGUUCCUU CAAGCACUUCACA UAG   UUCAG      UCAUA  A  ||| ||  ||||||||| ||||||||||||| |||   |||||      |||||  CCG GG  CUCAAGGGG GUUUGUGAAGUGU AUC   GAGUU      AGUGU  C A   U  CU         -             U   GAA     ----UU     UA
Stem-loop sequence	UGGCCCCAGGAGUUCCUUGCAAGCACUUCACAUAGAACUUCAGUUACUCUCAUACAACAUUGUGAUUUUGAGAAGCUAUUGUGAAGUGUUUGGGGGAACUCUCGGUGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK111395.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||||||||||||||||* targets:318   GAGUUCCCCCAAACACUUCAG   338 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-182-D04, full insert sequence	NA	coding protein	psRNATarget
XM_015775300.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||||||||||||||||* targets:322   GAGUUCCCCCAAACACUUCAG   342 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331934), mRNA	low affinity sulfate transporter 3(LOC4331934)	coding protein	psRNATarget
AK067353.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||*|||||||||||||* targets:112   GAGUUCACCCAAACACUUCAG   132 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013100L12, full insert sequence	NA	coding protein	psRNATarget
XM_015775294.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||*|||||||||||||* targets:529   GAGUUCACCCAAACACUUCAG   549 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X3, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget
XM_015775293.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||*|||||||||||||* targets:2647   GAGUUCACCCAAACACUUCAG   2667 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X2, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget
XM_015775292.1	ncRNA:21   CUCAAGGGGGUUUGUGAAGUG   1   ||||||*|||||||||||||* targets:2776   GAGUUCACCCAAACACUUCAG   2796 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X1, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget

Reference

1	PMID:19951405 "Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins"; Merchan F, Boualem A, Crespi M, Frugier F; Genome Biol. 10:R136(2009).