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BaseInfo

ncRNA ID	novel_zma_miR2819
Species	Zea mays
Class	miRNA
Genome position	Chr1:297308982-297309066 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR2089699;SRR2089700;SRR2089702;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	65 - AUUGAAGGGGAUUGGAGGGGG - 85
Stem-loop(if miRNA)	--                         -         -AA  A   AUUGAAGGGGAUUGGAGGGGGUUAA UCUCUCCCU   UC A   ||||||||||||||||||||||||| |||||||||   || A   UAGCUUCCCCUAACCUCCCCUAAUU AGGGAGGGA   AG C CC                         U         ACA  U
Stem-loop sequence	AUUGAAGGGGAUUGGAGGGGGUUAAUCUCUCCCUAAUCAAACUGAACAAGGGAGGGAUUUAAUCCCCUCCAAUCCCCUUCGAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235143.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|||||||||||=|||||||| targets:43   UCCCCUCCAAUCUCCUUCAAU   63 Target Full Sequence	1.5	Sequence 1138 from Patent EP2985353	NA	coding protein	psRNATarget
JB163474.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|||||||||||=|||||||| targets:43   UCCCCUCCAAUCUCCUUCAAU   63 Target Full Sequence	1.5	Sequence 1138 from Patent EP2559767	NA	coding protein	psRNATarget
HI403013.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|||||||||||=|||||||| targets:43   UCCCCUCCAAUCUCCUUCAAU   63 Target Full Sequence	1.5	Sequence 1138 from Patent EP2074227	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||=||||||||||||||||| targets:58   UCCUCUCCAAUCCCCUUCAAU   78 Target Full Sequence	1.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|=|||||||||||||||=|| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|=|||||||||||||||=|| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|=|||||||||||||||=|| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|=|||||||||||||||=|| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|=|||||||||||||||=|| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|=|||||||||||||||=|| targets:91   UCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020543383.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|||||=|||||||||||||* targets:232   UCCCCUUCAAUCCCCUUCAAG   252 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA	NA	coding protein	psRNATarget
AY106606.2	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   ==|||||=||||||||||=|| targets:504   UUCCCUCUAAUCCCCUUCGAU   524 Target Full Sequence	2.5	Zea mays PCO135617 mRNA sequence	NA	coding protein	psRNATarget
BT085493.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   ==|||||=||||||||||=|| targets:784   UUCCCUCUAAUCCCCUUCGAU   804 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||||||||||||||*||||| targets:3273   UCCCCUCCAAUCCCCCUCAAU   3293 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||||||||||||||*||||| targets:1594   UCCCCUCCAAUCCCCCUCAAU   1614 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||||||||||||||*||||| targets:1594   UCCCCUCCAAUCCCCCUCAAU   1614 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682061.2	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   *==||||=||||||||||||| targets:154   AUUCCUCUAAUCCCCUUCAAU   174 Target Full Sequence	2.0	PREDICTED: Zea mays cation cation antiporter (LOC100285634), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551510.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   *||||||||||||||*||||| targets:1568   ACCCCUCCAAUCCCCCUCAAU   1588 Target Full Sequence	1.5	PREDICTED: Zea mays putative ACT-domain containing protein kinase family protein (LOC100280199), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ111591.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||=||||*|||||||||||| targets:74   UCCUCUCCCAUCCCCUUCAAU   94 Target Full Sequence	2.5	TSA: Zea mays contig47252, mRNA sequence	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =|||=||||||||||*||||| targets:33   UCCCUUCCAAUCCCCCUCAAU   53 Target Full Sequence	2.5	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
BT069589.2	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||=|*||||||||||||||| targets:1023   UCCUCACCAAUCCCCUUCAAU   1043 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||*||||||||=|||||||| targets:3084   UCCGCUCCAAUCUCCUUCAAU   3104 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||*||||||||=|||||||| targets:3097   UCCGCUCCAAUCUCCUUCAAU   3117 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||*||||||||=|||||||| targets:3128   UCCGCUCCAAUCUCCUUCAAU   3148 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   *|||||=||||||||*||||| targets:843   ACCCCUUCAAUCCCCCUCAAU   863 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:21   GGGGGAGGUUAGGGGAAGUUA   1   =||*|||||||||||*||||| targets:3921   UCCACUCCAAUCCCCCUCAAU   3941 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget