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BaseInfo

ncRNA ID	novel_zma_miR2813
Species	Zea mays
Class	miRNA
Genome position	Chr1:293087807-293087871 [+]
Reference genome	RefGen_v4
Source	SRR2089713
Length	24
Mature sequence(if miRNA)	42 - AAUCUAGGGGGUAAACAAACAGGC - 65
Stem-loop(if miRNA)	--                   G     U    C   CUGUUUGUUUGCCUCUUAG AUUAU UAAU C   ||||||||||||||||||| ||||| ||||   GACAAACAAAUGGGGGAUC UAAUA AUUA A CG                   -     U    G
Stem-loop sequence	CUGUUUGUUUGCCUCUUAGGAUUAUUUAAUCCAGAUUAUAUAAUCUAGGGGGUAAACAAACAGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238804.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   |=||||||||||||||=||||||| targets:7   GUCUGUUUGUUUACCCUCUAGAUU   30 Target Full Sequence	1.5	Sequence 4799 from Patent EP2985353	NA	coding protein	psRNATarget
HI406674.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   |=||||||||||||||=||||||| targets:7   GUCUGUUUGUUUACCCUCUAGAUU   30 Target Full Sequence	1.5	Sequence 4799 from Patent EP2074227	NA	coding protein	psRNATarget
JB167135.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   |=||||||||||||||=||||||| targets:7   GUCUGUUUGUUUACCCUCUAGAUU   30 Target Full Sequence	1.5	Sequence 4799 from Patent EP2559767	NA	coding protein	psRNATarget
AY105949.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   |=||||||||||||||=||||||| targets:461   GUCUGUUUGUUUACCCUCUAGAUU   484 Target Full Sequence	1.5	Zea mays PCO103361 mRNA sequence	NA	coding protein	psRNATarget
HI406578.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   *|||||||||||||||=||||||| targets:2   CCCUGUUUGUUUACCCUCUAGAUU   25 Target Full Sequence	1.5	Sequence 4703 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238708.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   *|||||||||||||||=||||||| targets:2   CCCUGUUUGUUUACCCUCUAGAUU   25 Target Full Sequence	1.5	Sequence 4703 from Patent EP2985353	NA	coding protein	psRNATarget
JB167039.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   *|||||||||||||||=||||||| targets:2   CCCUGUUUGUUUACCCUCUAGAUU   25 Target Full Sequence	1.5	Sequence 4703 from Patent EP2559767	NA	coding protein	psRNATarget
BT042384.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   *|||||||||||||||=||||||| targets:1366   CCCUGUUUGUUUACCCUCUAGAUU   1389 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0215J03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148495.1	ncRNA:24   CGGACAAACAAAUGGGGGAUCUAA   1   *|||||||||||||||=||||||| targets:1366   CCCUGUUUGUUUACCCUCUAGAUU   1389 Target Full Sequence	1.5	Zea mays RNA binding (RRM/RBD/RNP motifs) family protein (pco109284), mRNA	NA	coding protein	psRNATarget