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BaseInfo

ncRNA ID	novel_zma_miR2811
Species	Zea mays
Class	miRNA
Genome position	Chr1:270717965-270718052 [+]
Reference genome	RefGen_v4
Source	SRR2089713;SRR2089714;SRR2287164;SRR2089708
Length	20
Mature sequence(if miRNA)	1 - AAGGGGAUUGGAGGGGCUAA - 20
Stem-loop(if miRNA)	--       U                     -GCAGGG         AAGGGGA UGGAGGGGCUAAAAUCCCCUU       CUGGUUU   ||||||| |||||||||||||||||||||       ||||||G   UUCCCCU ACCUCCCCGAUUUUAGGGGAA       GACCAGU CG       U                     AUUAAGG
Stem-loop sequence	AAGGGGAUUGGAGGGGCUAAAAUCCCCUUGCAGGGCUGGUUUGUGACCAGGGAAUUAAAGGGGAUUUUAGCCCCUCCAUUCCCCUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974541.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||| targets:1478   UUAGCCCCUUCAAUCCCCUU   1497 Target Full Sequence	1.5	Zea mays clone 452157 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137538.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||| targets:1577   UUAGCCCCUUCAAUCCCCUU   1596 Target Full Sequence	1.5	Zea mays Ycf20-like protein (LOC100192115), mRNA	NA	coding protein	psRNATarget
XM_008682827.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||| targets:1524   UUAGCCCCUUCAAUCCCCUU   1543 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008682826.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||| targets:1617   UUAGCCCCUUCAAUCCCCUU   1636 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU957690.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||| targets:1650   UUAGCCCCUUCAAUCCCCUU   1669 Target Full Sequence	1.5	Zea mays clone 1610264 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682824.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||| targets:1670   UUAGCCCCUUCAAUCCCCUU   1689 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682823.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||| targets:1716   UUAGCCCCUUCAAUCCCCUU   1735 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682825.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||| targets:1838   UUAGCCCCUUCAAUCCCCUU   1857 Target Full Sequence	1.5	PREDICTED: Zea mays Ycf20-like protein (LOC100192115), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||||||||||||* targets:331   UUAGCCCCUCCAAUCCCCUC   350 Target Full Sequence	1.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||||||||||||* targets:3499   UUAGCCCCUCCAAUCCCCUC   3518 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||||||||||||* targets:3534   UUAGCCCCUCCAAUCCCCUC   3553 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163850.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   ||||||||||||||=||||* targets:73   UUAGCCCCUCCAAUUCCCUC   92 Target Full Sequence	2.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
HI403389.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   ||||||||||||||=||||* targets:73   UUAGCCCCUCCAAUUCCCUC   92 Target Full Sequence	2.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   ||||||||||||||=||||* targets:73   UUAGCCCCUCCAAUUCCCUC   92 Target Full Sequence	2.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   ||||||||||=||||||||* targets:201   UUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	2.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
JB166281.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   ||||||||||=||||||||* targets:201   UUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	2.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   ||||||||||=||||||||* targets:201   UUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	2.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||||||||=|||||||||* targets:1112   UUAGCCCCUUCAAUCCCCUC   1131 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||*|||||||||||||||* targets:683   UUAUCCCCUCCAAUCCCCUC   702 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||*|||||||||||||||* targets:1030   UUAACCCCUCCAAUCCCCUC   1049 Target Full Sequence	2.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||*|||||||||||||||* targets:1563   UUAUCCCCUCCAAUCCCCUC   1582 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||*|||||||||||||||* targets:1583   UUAUCCCCUCCAAUCCCCUC   1602 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||*|||||||||||||||* targets:1607   UUAUCCCCUCCAAUCCCCUC   1626 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   |||*|||||||||||||||* targets:1640   UUAUCCCCUCCAAUCCCCUC   1659 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT017268.1	ncRNA:20   AA-UCGGGGAGGUUAGGGGAA   1   ||-|*|||||||||||||||| targets:909   UUCAUCCCCUCCAAUCCCCUU   929 Target Full Sequence	3.0	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   *|||||||||||||||*||* targets:217   CUAGCCCCUCCAAUCCACUC   236 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
EU941453.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   *|||||||*||||||||||* targets:58   CUAGCCCCCCCAAUCCCCUC   77 Target Full Sequence	2.5	Zea mays clone 1453301 mRNA sequence	NA	coding protein	psRNATarget
EU945351.1	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   *||||||||||||*|||||* targets:414   CUAGCCCCUCCAACCCCCUC   433 Target Full Sequence	2.5	Zea mays clone 260481 mRNA sequence	NA	coding protein	psRNATarget
XM_008672161.2	ncRNA:20   AAUCGGGGAGGUUAGGGGAA   1   *||||||||||||*|||||* targets:1266   CUAGCCCCUCCAACCCCCUC   1285 Target Full Sequence	2.5	PREDICTED: Zea mays TVP38/TMEM64 family membrane protein YtxB (LOC103647660), mRNA	NA	coding protein	psRNATarget