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BaseInfo

ncRNA ID	novel_zma_miR2798
Species	Zea mays
Class	miRNA
Genome position	Chr9:36617601-36617689 [-]
Reference genome	RefGen_v4
Source	SRR2089713;SRR5451003
Length	24
Mature sequence(if miRNA)	66 - AUUUGGUGACAAAGGGAUCCCGGG - 89
Stem-loop(if miRNA)	--          AAA                            AA   AUUUGGUGAC   GGGAUCCCGGGAGGAUUGGAGGGGAAAU  A   ||||||||||   ||||||||||||||||||||||||||||   UAAACCACUG   CCCUAGGGCCCUCCUAACCUCCCCUUUA  C AC          -GA                            AU
Stem-loop sequence	AUUUGGUGACAAAGGGAUCCCGGGAGGAUUGGAGGGGAAAUAAACUAAUUUCCCCUCCAAUCCUCCCGGGAUCCCAGGUCACCAAAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241793.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |||||||||||*|||||||||||| targets:91   CCCGGGAUCCCCUUGUCACCAAAU   114 Target Full Sequence	1.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |||||||||||*|||||||||||| targets:91   CCCGGGAUCCCCUUGUCACCAAAU   114 Target Full Sequence	1.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |||||||||||*|||||||||||| targets:91   CCCGGGAUCCCCUUGUCACCAAAU   114 Target Full Sequence	1.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |||||||||||*|||||||||||| targets:845   CCCGGGAUCCCCUUGUCACCAAAU   868 Target Full Sequence	1.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |||||||||||*|||||||||||| targets:884   CCCGGGAUCCCCUUGUCACCAAAU   907 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |||||||||||*|||||||||||| targets:889   CCCGGGAUCCCCUUGUCACCAAAU   912 Target Full Sequence	1.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |||||||||||*|||||||||||| targets:889   CCCGGGAUCCCCUUGUCACCAAAU   912 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |||||||||||*|||||||||||| targets:1494   CCCGGGAUCCCCUUGUCACCAAAU   1517 Target Full Sequence	1.5	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   |=|||||||||*|||||||||||| targets:101   CUCGGGAUCCCCUUGUCACCAAAU   124 Target Full Sequence	1.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   ||||*||||||*|||||||||||| targets:295   CCCGUGAUCCCCUUGUCACCAAAU   318 Target Full Sequence	1.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   =*|||||||||*|||||||||||| targets:109   UACGGGAUCCCCUUGUCACCAAAU   132 Target Full Sequence	1.5	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   =|||*||||||*|||||||||||| targets:398   UCCGUGAUCCCCUUGUCACCAAAU   421 Target Full Sequence	1.5	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   =|||*|||||**|||||||||||| targets:155   UCCGUGAUCCACUUGUCACCAAAU   178 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   =|||*|||||**|||||||||||| targets:155   UCCGUGAUCCACUUGUCACCAAAU   178 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   =|||*|||||**|||||||||||| targets:155   UCCGUGAUCCACUUGUCACCAAAU   178 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU972859.1	ncRNA:24   GGGCCCUAGGGAAACAGUGGUUUA   1   *******||||||||||||||||| targets:2   AAACUCUUCCCUUUGUCACCAAAU   25 Target Full Sequence	2.0	Zea mays clone 389166 ATP binding protein mRNA, complete cds	NA	coding protein	psRNATarget